BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939543
Length=211
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01280.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 265 1e-70
> AT5G01280.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: proline-rich family protein (TAIR:AT3G09000.1); Has
1807 Blast hits to 1807 proteins in 277 species: Archae - 0;
Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses
- 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:114011-116237
REVERSE LENGTH=1557
Length=1557
Score = 265 bits (143), Expect = 1e-70
Identities = 185/205 (90%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 2 GGATGTTAGACGAGGAAGCATGGCGGGGAATTTCCGACCA-TCAGTGACGAAAGTTCCGG 60
|||||||||| ||||||||||||||||||||||||| || ||||||||||||| ||||
Sbjct 1194 GGATGTTAGAAAAGGAAGCATGGCGGGGAATTTCCGA-CATTCAGTGACGAAAGCACCGG 1252
Query 61 CCACTTCATTGAACAGTGTAAGATCATGTCGAAACCGGCCGGTGATCAGCAGCGGAAGCT 120
| ||||| || ||||||| ||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1253 CGACTTCGGTGTACAGTGTGAGATCATGTCGAAACCGGCCGGTGAGCAGCAGCCGAAGCT 1312
Query 121 CGGAATCAAGTGTCAACATTTTGCGCTTAGACGGTAGCGATGATAATCTGAGCGACATAA 180
||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| |
Sbjct 1313 CGGAATCAAGTGTCAACATTTTGTGCTTAGACGGTAGCGACGATAATCTCAGCGACATGA 1372
Query 181 GTTACTCTTAAAGAGTTACAA-TTA 204
||| ||||||| ||||||||| |||
Sbjct 1373 GTTGCTCTTAA-GAGTTACAACTTA 1396
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9400069063
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5