BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939543 Length=211 Score E Sequences producing significant alignments: (Bits) Value AT5G01280.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 265 1e-70 > AT5G01280.1 | Symbols: | BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:114011-116237 REVERSE LENGTH=1557 Length=1557 Score = 265 bits (143), Expect = 1e-70 Identities = 185/205 (90%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 2 GGATGTTAGACGAGGAAGCATGGCGGGGAATTTCCGACCA-TCAGTGACGAAAGTTCCGG 60 |||||||||| ||||||||||||||||||||||||| || ||||||||||||| |||| Sbjct 1194 GGATGTTAGAAAAGGAAGCATGGCGGGGAATTTCCGA-CATTCAGTGACGAAAGCACCGG 1252 Query 61 CCACTTCATTGAACAGTGTAAGATCATGTCGAAACCGGCCGGTGATCAGCAGCGGAAGCT 120 | ||||| || ||||||| ||||||||||||||||||||||||| ||||||| |||||| Sbjct 1253 CGACTTCGGTGTACAGTGTGAGATCATGTCGAAACCGGCCGGTGAGCAGCAGCCGAAGCT 1312 Query 121 CGGAATCAAGTGTCAACATTTTGCGCTTAGACGGTAGCGATGATAATCTGAGCGACATAA 180 ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||| | Sbjct 1313 CGGAATCAAGTGTCAACATTTTGTGCTTAGACGGTAGCGACGATAATCTCAGCGACATGA 1372 Query 181 GTTACTCTTAAAGAGTTACAA-TTA 204 ||| ||||||| ||||||||| ||| Sbjct 1373 GTTGCTCTTAA-GAGTTACAACTTA 1396 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 9400069063 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5