BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939548
Length=419
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-8343... 372 2e-102
> AT3G03500.1 | Symbols: | TatD related DNase | chr3:832929-834350
FORWARD LENGTH=819
Length=819
Score = 372 bits (201), Expect = 2e-102
Identities = 223/234 (95%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1 AGCTTGAACTTGCAAAAGAAATGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTCG 60
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 350 AGCTTGAACTTGCAAAAGAACTGAACAAACCAGTAGCAGTTCATTGCATCGATGCATTTG 409
Query 61 ATGATCTCCTAGAGATAATGAGATCCATAGGGCCTTTTCCTGGTGGTGTGATTCTTCATT 120
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 410 ATGATCTCCTAGAGATAATGAGATCCATAGGGCCTTTTCCTGCTGGGGTGATTCTTCATT 469
Query 121 CATTCAATGGTTCAGCTGAAGGTGTTCCTAAACTCAATGAGATTGGTGCATACTTGTCTT 180
||||||||||||||||||||| ||||||||||||| |||| ||||||||||||| ||||
Sbjct 470 CATTCAATGGTTCAGCTGAAGTTGTTCCTAAACTCGCTGAGCTTGGTGCATACTTCTCTT 529
Query 181 TCTCTGGCTGGTTCACTTACATTGATGAGAAAATTGCGAAGAAGACTTTGAAAT 234
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 530 TTTCTGGCTGGTTCACTTACATTGATGAGAAAATTGCCAAGAAGACTTTGAAAT 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19855760855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5