BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939564
Length=1547
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01140.1 | Symbols: | Protein of unknown function (DUF674) ... 937 0.0
AT5G01150.1 | Symbols: | Protein of unknown function (DUF674) ... 433 3e-120
> AT5G01140.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:49891-51437 FORWARD LENGTH=1422
Length=1422
Score = 937 bits (507), Expect = 0.0
Identities = 1122/1405 (80%), Gaps = 98/1405 (7%)
Strand=Plus/Plus
Query 154 GGAACAATCGTCCGACTGCTTGGGAAGCATC--AAGTCTCTGAGCCAGTTACCGTTGGAT 211
|||||||||||| || |||||| ||||||| ||| ||||| |||||||| ||||||
Sbjct 85 GGAACAATCGTCAGATTGCTTGCAAAGCATCGAAAG--TCTGATCCAGTTACTATTGGAT 142
Query 212 GTATTAGCAACCTTTATACAAGTGTTGTGGACATGAAAATTGATGATTTTGAGACTGAAG 271
|| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 143 GTCTTAGAAACCTTTATACAAGTGTTGTGGACATGGAACTTGATGATTTTGAGACTGATG 202
Query 272 CTTGTAAGCAGATGTTGCTTTATCCCAGGAATTACGTTAGGGAAGCTCAATGCAGAAAGT 331
||||||||||||||||||||||||||| | | || ||||||| ||||||| |||||| |
Sbjct 203 CTTGTAAGCAGATGTTGCTTTATCCCAAG-A--ACATTAGGGAGGCTCAATACAGAAACT 259
Query 332 TTAAGCTCAACATAAACCCTACTGAAAACTTCAAGTGCTTTGGGTGCAGCTCTTTCCCTA 391
||||||||||||| || ||| ||||| ||| ||||| ||||| ||| | | |||| | |
Sbjct 260 TTAAGCTCAACATTGACACTAATGAAAGCTTAAAGTGTTTTGGTTGCCGATTTTTCTCAA 319
Query 392 GCTGCTCAATGTGCAGTAATTTTAACACCTCCCGATGTAGGTGCGGTAAGTTGATG-ACC 450
|||| ||||||||||||||| ||||| |||| ||||| ||||| ||| ||||| |
Sbjct 320 TCTGCAGAATGTGCAGTAATTTCAACACGTCCCTATGTAAATGCGGAAAGCTGATGAATG 379
Query 451 AGGGAGATTGA-TTTACTAGAAGATGAGGAGGTCATTGTAGGCATCATGCAAAATGATCT 509
| ||||| | | ||| || | | || | | || | | | |||||||| |
Sbjct 380 A-GGAGA-TAAGTTT-CT------T-A-GA-AT-A-TG-A-G------G-AAAATGATGT 416
Query 510 CCG-TGGAGTATTTATCAGAGACAGGTCGTCATTTATCATAACCGACGACTTAAAACTGA 568
|| ||||||||||| ||||||| ||||||||||||||||||||| ||||| | ||| |
Sbjct 417 -CGAAGGAGTATTTATGAGAGACAAGTCGTCATTTATCATAACCGATGACTTGAGACTCA 475
Query 569 CAGTTGACTCTACTAGTTCTCTCTTGCAAACGCTCAAGGCTCTTGGTTTTTCTGATGTTA 628
| | ||| ||||||||||||||||||||||| ||||| | |||||||| | |||||||||
Sbjct 476 CGGATGATTCTACTAGTTCTCTCTTGCAAACACTCAAAGATCTTGGTTGTGCTGATGTTA 535
Query 629 GTAAGCTGAGAGAACGGGTTCTTGATATCGGTCTCAAAGAGGTTTTGACTTTGCTGCGAT 688
||||||| ||||| | ||||||||||||||||||||| |||||| |||||||| ||| ||
Sbjct 536 GTAAGCTAAGAGAGCAGGTTCTTGATATCGGTCTCAAGGAGGTTATGACTTTGATGCAAT 595
Query 689 GTGTATTCTCCTCAAGTTCTCCCTTGACAGACACTTTCTTGAAGAATCAAAGTTTACACA 748
|||| ||| |||||| | | || ||||| || ||||||||||||||||||||| | |||
Sbjct 596 GTGTTTTCACCTCAAATACACCTTTGACGGATGCTTTCTTGAAGAATCAAAGTTCAAACA 655
Query 749 AGGTGAGGAAGATTTATA-AAAGGCTGAGTCCATGCTTGGAGAAGAACGGAGATGAAGCA 807
||||||||||||||||| ||| |||||| || | || | || ||||||||||||
Sbjct 656 CGGTGAGGAAGATTTATAGAAA-GCTGAG----TG-AT-GA-TA-AA-GGAGATGAAGCA 705
Query 808 GAACAAGACAAAGTAATAACTTTTGATGCAATAGTAAGGAAACAGGACATGAAGATTTTG 867
|||| ||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 706 GAACCAGACAAAGTTATAACTATTGATGCTATAGTAAGGAAACAGGACATGAAGATTTTG 765
Query 868 TATGTTGAGTGCCGTGAAGACTTTGTTGATCTTCTTTTAACTTTTCTCGCCATTCCACTG 927
|| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 766 TACGTTGAGTGCGGTGAAGACTTTGTTGATCTTCTTTTCACTTTTCTCGCCATTCCGTTG 825
Query 928 GAATCTATATGGGAAGTCTCTGGCAACCA-TATTAGTTTAGGAT-GCGTTGGGAACTTAA 985
|| |||||||||||| ||||||| || || ||||| |||| | || ||||||||||
Sbjct 826 GAGTCTATATGGGAAATCTCTGGTAA-CAGTATTACAATAGG-TCGCATTGGGAACTTGT 883
Query 986 GCAGAAGCTTCAAGGACTTGAGTGATAATGAAAG-GACA-CAAGTGTCAAATCCGAAAT- 1042
|||||||||||| |||||||||||||||| ||| | | | | | | |||| ||||
Sbjct 884 TCAGAAGCTTCAAAGACTTGAGTGATAATG-AAGTGTTATC-A--G-C--ATCC-AAATG 935
Query 1043 TCGTGCTTCCGTATTACTATAGTTGCCAGAATCAGTTGCTCAATATCATCACTTTC-AAA 1101
| || |||||||||| ||||| |||||||| ||||||||||| || | || | | | |
Sbjct 936 T-ATGATTCCGTATTATTATAGGTGCCAGAAACAGTTGCTCAAAATAAGAAC-TCCTACA 993
Query 1102 CCACAGTTTTACGTA--AC-C----A-T-C-A-ATAGGGACAT-TTC-CAGACCGTTGTG 1148
|||| | ||||| || || | | | | | | | | | | ||| || | | || |
Sbjct 994 CCACGGGTTTACTTAGGACACTGTTATTCCAAGACACTGTCTTATTCTCAAAGC-TT-T- 1050
Query 1149 CTGTGTGACTACAAAGCCAACCTTTATA-C-AAGTGAGTTTTATTGATCCAAAATAC-AA 1205
| | |||||||||| | | || | | | | ||| |||| | |||||||||| | |
Sbjct 1051 -TATTTGACTACAAAACGTA-CTACAAAGCGCA-TGACTTTTGTGGATCCAAAAT-CTGA 1106
Query 1206 TGGCCATCATTCAGTTTCAACAGAAGGTAGTGGTGGTTTCATGAAGAGAGATTCAAAGTT 1265
| | | || | |||| ||| |||| || ||||| ||||||||| |||||||
Sbjct 1107 TTGTTGT-GGTC-G-GTCAAAAGATGGTA-AGG-GGTTT-GTGAAGAGAGGGACAAAGTT 1160
Query 1266 TACGGTATCAGATGATCTGGTTATTGCACCTAAGAACACTA-CTTCAACCTTTTGGGCAT 1324
|| || ||||||||||| || | ||||||||| ||| | ||||| |||| | |
Sbjct 1161 TATTGTGTCAGATGATCTTATTGTAACACCTAAGATTTCTAGC-TCAACATTTTCCGTGT 1219
Query 1325 TAAAGAAGCTGCAGATTCACACTA-ACGATATAGAGGTGCAA-AAAGTTAGCATCAGCAA 1382
| |||||| | ||||||| ||| | | ||| | ||||||||| || ||| |||||||||
Sbjct 1220 TGAAGAAGTTTCAGATTCTCAC-AGATGATTTGGAGGTGCAAGCAA-TTACCATCAGCAA 1277
Query 1383 AGCTCATGCTTTGAATCTGTTGAGAGCTTCAGTGGTGACATCCTCTGCTTTGAGCTCTGC 1442
|| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1278 TGCAGATGCTTTGAATCTGTTGGGAGCTTCATTGGTGACATCCTCTGCTTTGAGCTCTGC 1337
Query 1443 TTTTGGGAATTTGATTGTAAAGAAACCCAAGGAAGAGAATGTTTCATGGAACCCGGTTTC 1502
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1338 TTTTGGGAATTTGATTGTGAAGAAACCGAAGGAAGAGAATGTTTCATGGAACCCGGTTTC 1397
Query 1503 AAAGAAACTAAAGGTAGAGACTTGA 1527
|||||||| |||||| |||||||||
Sbjct 1398 AAAGAAACCAAAGGTTGAGACTTGA 1422
> AT5G01150.1 | Symbols: | Protein of unknown function (DUF674)
| chr5:51988-53817 FORWARD LENGTH=1674
Length=1674
Score = 433 bits (234), Expect = 3e-120
Identities = 736/973 (76%), Gaps = 56/973 (6%)
Strand=Plus/Plus
Query 54 TTTGAGACTTATCATTGATGAAAAGAAAAACAAGGTCGTTTTAGCCGAGGCTGGTAAGGA 113
|||||||||||| |||||||| ||||||||||||| ||||| || || ||| ||| |||
Sbjct 33 TTTGAGACTTATTGTTGATGAAGAGAAAAACAAGGTTGTTTTGGCTGAAGCTTGTAGGGA 92
Query 114 TTTTGTTCAAGTTCTCTTCAGTTTTTTGACA-TTACCAATGGGAACAATCGTCCGACTGC 172
||||||| | || |||||||| || ||||| || ||||||||||| || ||| || |||
Sbjct 93 TTTTGTTGATGTACTCTTCAGCCTTCTGACACTT-CCAATGGGAACCATTGTCAGATTGC 151
Query 173 TTGGGAAGCATC-AAGTCTCTGAGCCAGTTAC-CGTTGGATGTATTAGCAACCTTTATAC 230
||| ||| |||| || ||||||||||| || | | || ||| ||| ||| || ||||
Sbjct 152 TTGAGAATCATCGAA-AATCTGAGCCAGTAACTC-TGGGCTGTTTTAACAATCTCTATAG 209
Query 231 AAGTGTTGTGGACATGAAAATTGA-TGATTTTGAGACTGAAGCTTGTAAGCAGATG-TTG 288
|||||||||||||||| | ||| || |||||||||||||||||||||||||||| |||
Sbjct 210 AAGTGTTGTGGACATGGGCAGTGATTG-TTTTGAGACTGAAGCTTGTAAGCAGATGCTTG 268
Query 289 CTTTATCCCAGGAATTACGTTAGGGAAGCTCAA-TGCAGAAAGT-TTAAGCTCAACATAA 346
| ||||| | || | || | || ||| | |||| |||| |||||||||||||||
Sbjct 269 -TGTATCCGAAGAGT---GTGAAAGAC-CTCCAGTGCA-AAAGGCTTAAGCTCAACATAA 322
Query 347 ACCCTACTGAAAACTTCAAGTGCTTTGGGTGCAGCTCTTTCCCTAGCTGCTCAATGTGCA 406
|||||||||| || ||||||| ||| |||| | || | | || ||| ||| ||
Sbjct 323 ACCCTACTGAGGACATCAAGTGTTTTAAGTGCT-CAAGTTAC-T-GCGGCT---TGTACA 376
Query 407 GTAATTTTAACACCTCCCGATGTAGGTGCGGTAAGTTGATGACC-AGGGAGATTGATTTA 465
||||||| | |||||| |||| | ||||| || || |||| | ||| ||||| | |||
Sbjct 377 GTAATTTCAGCACCTCTAAATGTCGTTGCGGAAAATTTATGAACGAGG-AGATTCAGTTA 435
Query 466 CTAGAA-GATGAGGAGGTCATTGTAGGCATCATGCAAAATGATC-TCCGTGGAGTATTTA 523
| || || || | | ||| ||||| | ||| ||||| | ||||||||||
Sbjct 436 GAA-AACGAGGAACAAG--ATT-TAGGCCGGTTTCAAGATGATGATAA-TGGAGTATTTG 490
Query 524 TCAGAGACAGGTCGT-CATTTATCATAACCGACGACTTAAAACTGACAGTTGACTCTACT 582
|||| | |||| || |||| || ||||||| ||||| || || |||| | || |||
Sbjct 491 TCAGCGGTAGGT-GTTCATTCGTCTTAACCGATGACTTGGAAGTGTCAGTCAAGTCCACT 549
Query 583 AGTTCTC-TCTTGCA-AACGCTCAAGGCTCTT-GGTTTTTCTGATGTTAGTAAGCT-GAG 638
| || ||||| | || |||||| | ||| |||| | |||||||| ||||||| | |
Sbjct 550 -GAACTTGTCTTGAATAA-GCTCAAATC-CTTAGGTTGTGCTGATGTTGGTAAGCTCG-G 605
Query 639 AGAACGGGTTCTTGATATCGGTCTCAAAGAGGTTTTGACTTTGCTGCGATGTGTATTCTC 698
||| || |||||||||| ||| | |||||||| ||||| ||||| ||||| |||||||
Sbjct 606 TGAAAGGCTTCTTGATATTGGTGTGAAAGAGGTACTGACTCTGCTGGGATGTATATTCTC 665
Query 699 CTCAAGTTCTCCCTTGACAG-ACACTTTCTTGAAGAATCAAAGTTTACACAAGGTGAG-- 755
||||| | ||||||| | || ||| ||||||||| || || | |||||||||||| |
Sbjct 666 CTCAAATGCTCCCTTAA-AGGACATTTTCTTGAACAAG-AA-GATTACACAAGGTGCGAC 722
Query 756 GAAGATTTATAAAAGGCTGAGTCCATGCTTGGAGAAGAACGGAGATGAAGCAGAACAAGA 815
|||| |||| ||| || |||||||| |||||||| || | |||||||||||||| ||
Sbjct 723 GAAGTTTTACAAATCGCAAAGTCCATGTTTGGAGAAAAAAGAAGATGAAGCAGAACCTGA 782
Query 816 CAAAG-TAATAACTTTTGAT-GCAATAGTAAGGAAACAGGACATGAAGATTTTGTATGTT 873
|||| || ||||||| || ||| | || ||||| ||||||||||||||||| | ||||
Sbjct 783 -AAAGGTAGTAACTTT-GAAAGCATTTGTGAGGAAGCAGGACATGAAGATTTTATTTGTT 840
Query 874 GAGTGCCGTGAAGACTTTGTTGATCTTCTTTTAACTTTTCTCGCCATTCCACTGGAATCT 933
|| ||| | || || |||||||| |||||||| ||||| | || | || || ||||||
Sbjct 841 GAATGCGGAGAGGAATTTGTTGAGCTTCTTTTCTCTTTTATTGCTGTCCCGCTTGAATCT 900
Query 934 ATATGGGAAGTCTCTGGCAACCA-TAT-TAGTTTAGGATGCGTTGGGAACTTAAGCAGAA 991
||||||| ||||||||| | | ||| | || ||| ||| | || ||| | | ||||
Sbjct 901 GCATGGGAAATCTCTGGCAGC-AGTATCTCCTT-AGGTTGCATAGGAAACATGTGTAGAA 958
Query 992 GCTTCAAGGACTT 1004
||||| ||||||
Sbjct 959 CCTTCAGGGACTT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76355028945
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5