BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939568
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G01090.1 | Symbols: | Concanavalin A-like lectin family pro... 1615 0.0
> AT5G01090.1 | Symbols: | Concanavalin A-like lectin family protein
| chr5:32832-34326 FORWARD LENGTH=1495
Length=1495
Score = 1615 bits (874), Expect = 0.0
Identities = 1032/1108 (93%), Gaps = 11/1108 (1%)
Strand=Plus/Plus
Query 1 CAGTTTCTTCAAGCTCAGCTATGGCGGTCTTCAAAACCCTAGCTTTTCTGTTCTTTTTAT 60
||| |||||||||||||||||||||||||||||||||||||||||| || ||| |||||
Sbjct 204 CAGATTCTTCAAGCTCAGCTATGGCGGTCTTCAAAACCCTAGCTTTCCTATTCGTTTTAA 263
Query 61 GCTTCGTGATTTACCAAGCAGTGGCTGTTACAGATGTAAATTCATCGTTTTCGTTTAATG 120
|| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 264 GCATCGTGATTTACCAATCAGTGGCTGTTACAGATGTAAATTCATCGTTTTCCTTTAATG 323
Query 121 GGTTTGTGAAATCTCCAAGCTTTGACAAGAATGTTGCTCTGTTTGGAGATTCGAAGCTCG 180
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 324 GGTTTGTGAAAGCTCCAAGCTTTGACAATAATGTTGCTCTGTTTGGAGATTCGAAGCTCG 383
Query 181 TTAATGGCGGTCCATCGATTCAATTGACTGACTCAGTGAGTCGAAGTGAAGGGCGAGTTA 240
|| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 384 TTCATGGCGGTCCATCGATACAATTGACTGACTCAGTGAGTCGCAGTGAAGGGCGAGTTA 443
Query 241 TTTACAAGAAACCCATCAGACTATTCCAAGGTAAAGAGAGAAACTCTTCCGGATCATTCT 300
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 444 TTTACAAGAAACCCATCAGACTGTTCCAAGGTAAAGAGAGAAACTTTTCCGGATCATTCT 503
Query 301 CAACTAGTTTCTCGTTTTCGATGTCTGATGAGATTGGTAGTGTCCTGGCTTTTGTAATGG 360
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 504 CAACTAGTTTCTCGTTTTCGATGTCTGATGAGATTGGTAGTGTCTTGGCTTTTATAATGG 563
Query 361 TTCCAAGAGGTTTGGATCTTAGGTTGTTTGGTAGAAAGGGTAATA---GTTCCTCTGGTC 417
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 564 TTCCAAGAGGTTTGGATCTTAGGTTGTTTGGTAGAAAGGGTAATAATAGTTCCTCTGGTT 623
Query 418 TAGGGTTCTTATTGAAACACAAGGTTGTTGCTGTTGAGTTTGGTATCTCCAAAAGAGGGA 477
|||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 624 TAGGGTTCTTATTGAAACACAAAGTTGTTGCTGTTGAGTTTGGTATCTCCAAGAGAGGGA 683
Query 478 ATCGTGTTGGGATCTTAGTTGGTAGACCTGAATCTGGTAAAGTTAGAAAGTTATCATCTT 537
||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 684 ATCATGTAGGGATCTTAGTTGGTCGTCCTGAATCTGGTAAAGTTAGAAAGTTATCATCTT 743
Query 538 TTGGTGACCATTTCAATGGAGAGAAGAAATTGAATTGTTGGATTGATTATGAGGCAAGTT 597
||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 744 TTGGTCACCATTTCAATGAAGAGAAGAGATTGAATTGTTGGATTGATTATGAGGCAAGCT 803
Query 598 CAAAGAGAATAGAGGTTCGTTTGAGTCTATCTACGGCTTTAAAGCCGGTGGATCCATTTG 657
|||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |
Sbjct 804 CAAAGAGAATAGAGGTTCGTTTGAGTCTATCTGCTGCCTTAAAGCCGGTGGATCCATTCG 863
Query 658 TGTCTTACT-TGGTAGACTTGGCTAAGCTATGGAAAGATGGGAAGTTCATGGTGGGTCTA 716
||||||||| || |||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 864 TGTCTTACTCTG-TAGACTTGGCTAAGCTATGGAAAGATGGGAAGTTTATGGTGGGTTTA 922
Query 717 ACCTCTGCAAATGGAAACTCTTCAAAGCCAGTTTATCTCCATTCATGGAACTTTAAACTG 776
|||||||||||||||||| |||||||||| |||||||||||||| |||| ||||||||||
Sbjct 923 ACCTCTGCAAATGGAAACACTTCAAAGCCGGTTTATCTCCATTCGTGGAGCTTTAAACTG 982
Query 777 AGACATCCTTCGATGAGGATTCACTCACAGCCGCTTGATCCAAACGATGTTTCCAAGACC 836
|||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 983 AGACATCCTTCGATGAGGATTCACTCGCAGCCGCTTGATCCAAACGACGTTTCCAAGACT 1042
Query 837 GCTAAGGAAGGGGAGAAGACGGTGGAAGTTAAGGGGAAAGGAAAATGCATATGGAGAATC 896
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1043 GTTAAGGAAGGGGAGAAGACGGTGGAAGTTAAGGGGAAAGGAAAATGTATATGGAGAATC 1102
Query 897 CTTGGTGCATTGGTTTTAGGTGCGGTTTGTGGGACTTTAGGAGCGATGT-CAGCGTTGTA 955
||||||||||||||||| || ||||||||||| || || ||||| |||| | ||||| ||
Sbjct 1103 CTTGGTGCATTGGTTTTGGGGGCGGTTTGTGGAACATTGGGAGCCATGTTC-GCGTTATA 1161
Query 956 CCTTTGGACAATATGCGGTAATCGGCAGTCAATGGCAATAGTTCCTGAGGAATGTGCTAA 1015
|||||||||||||||||||||| ||||||||||||| |||||||| |||||||||||| |
Sbjct 1162 CCTTTGGACAATATGCGGTAATAGGCAGTCAATGGCGATAGTTCCCGAGGAATGTGCTGA 1221
Query 1016 CAAAAAAGCGGATATCGTTGTAATGAAATCAGATGTTGTTGATGAAGAAGG-G--AAGAA 1072
| |||||||||||||| |||||| |||| | |||||||||| |||||||| | |||||
Sbjct 1222 CGAAAAAGCGGATATCCTTGTAACGAAAGCTGATGTTGTTGTTGAAGAAGAAGTCAAGAA 1281
Query 1073 GTAGCAGAAAGATAAGAGTTTGGT-TGT 1099
|||| ||||| | || |||||||| |||
Sbjct 1282 GTAGTAGAAAAAGAAAAGTTTGGTGTGT 1309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5