BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939577

Length=519
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02020.1 | Symbols: SIS | Encodes a protein involved in salt...   569    7e-162


> AT5G02020.1 | Symbols: SIS | Encodes a protein involved in salt 
tolerance, names SIS (Salt Induced Serine rich). | chr5:386018-388123 
REVERSE LENGTH=1101
Length=1101

 Score =  569 bits (308),  Expect = 7e-162
 Identities = 455/520 (88%), Gaps = 34/520 (7%)
 Strand=Plus/Plus

Query  10   GAGCGACCAAAT-CAATGGATGGAAGAAAGAAGAAAGCTTCCTCTT-CT-TCC-TCTTCT  65
            ||||||| || | ||||||| |||||||||||||||||||| |||| || ||| | ||||
Sbjct  188  GAGCGACGAATTCCAATGGAAGGAAGAAAGAAGAAAGCTTCGTCTTCCTCTCCTTGTTCT  247

Query  66   TCCTCATTAACATTAACCTCTGAGCTTTTTGGTTCCAGAGAAAACccttcttctccttct  125
            || ||  |  | |||||||||||||||||||||||||||||||| ||  | | | |||||
Sbjct  248  TCTTC-CT--CGTTAACCTCTGAGCTTTTTGGTTCCAGAGAAAA-CC--C-T-T-CTTCT  298

Query  126  ccttcttcctcttctgggattttcggatccattttccctcctccttctcAGGTTCTGGGA  185
             |  ||||||||||||| ||| ||||||||||||| |||||||||||| ||||| |||||
Sbjct  299  -C--CTTCCTCTTCTGGTATTCTCGGATCCATTTTTCCTCCTCCTTCTAAGGTTTTGGGA  355

Query  186  AGAGAATCTATGCGACAAGAGACTCTGGCTGCT-G--GCTGGAACGACAAAACCTCCAAG  242
            ||||||||| |||||||||||||| || ||| | |  |||||||||| ||||||||||||
Sbjct  356  AGAGAATCTGTGCGACAAGAGACTGTGACTGGTGGTTGCTGGAACGAGAAAACCTCCAAG  415

Query  243  ACTGTTGAAGATTTTGCAGGTGATGTTGATAGAAATAGGGAACAACAGGAGAATCATGGT  302
            ||   ||  |    |   ||| ||||||||||||| ||||||||||||||||||||||||
Sbjct  416  AC---TG--G----T---GGTAATGTTGATAGAAACAGGGAACAACAGGAGAATCATGGT  463

Query  303  TCAGGTTATCAG--G-ATCAGAGAGTACAACCTTGTCATCTGAGTTCTTCCATCTATTAC  359
            ||||||||||||  | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  464  TCAGGTTATCAGCAGGATCAGAGAGTACAACCCTGTCATCTGAGTTCTTCCATCTATTAC  523

Query  360  GGTGGCCCAGATGTTTATTTCCAGCCTCAGAATTCCAGCATCAACTCTACGAACAAGAAA  419
            ||||| || |||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct  524  GGTGGTCCTGATGTTTATTTCCAGCCTCAAAATTCCACCAGCAACTCTACGAACAAGAAA  583

Query  420  GATGGAGGGGAAGATGATTCCGGAAGTGCCGCAAGAGGAAATTGGTGGCAAGGATCTCTG  479
            |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct  584  GATGGAGGCGAAGATGATTCCGGAAGTGCCTCAAGAGGAAATTGGTGGCAAGGGTCTCTG  643

Query  480  TATTACTAAGTAGAGATCTTACTATTTAAGCAAACGTTAT  519
            |||||||||||||||||||||||| ||||||||| |||||
Sbjct  644  TATTACTAAGTAGAGATCTTACTACTTAAGCAAATGTTAT  683



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24815668618


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5