BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939584

Length=301
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02090.1 | Symbols:  | unknown protein; Has 30 Blast hits to...   374    3e-103


> AT5G02090.1 | Symbols:  | unknown protein; Has 30 Blast hits 
to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:412031-412698 REVERSE LENGTH=668
Length=668

 Score =  374 bits (202),  Expect = 3e-103
 Identities = 274/307 (89%), Gaps = 11/307 (4%)
 Strand=Plus/Plus

Query  1    GATTTCAGAGA-TT-AAAAG-AAATGGAAGGTTTGATTCCATTTTTGTACAAAGCCATTG  57
            |||| |||||| || ||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct  69   GATTGCAGAGATTTAAAAAGAAAATGGAGGGTTTGATTCCATTTTTGTACAAAGCCATTG  128

Query  58   TTATGTATAAAAGAGAAGGAAGTTTTTCGTCGGTTTTGCTAAGCGACCATCACTCTCCTT  117
            |||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct  129  TTATGTATAAAAGAGAAGGAAGCTTTTCGTCGGTTTTGCTCAGCGATCATCACTCTCCTT  188

Query  118  CTAACACCGGTTATTACATGCGACTTCCCGGCGACTCCTCCGGCAGGTTTCGAACGTCTG  177
            ||||| |||||||||||||||||||||| |||||||| ||  | |||||||||||||| |
Sbjct  189  CTAACGCCGGTTATTACATGCGACTTCCTGGCGACTCGTCTAGTAGGTTTCGAACGTCCG  248

Query  178  ATCGCCGGA-GATTTGGGACGGATCGTCTTGGATTACTTGAAACAACGCCGTCCTCTTCG  236
            ||| ||| | ||||||||||||| ||| ||||| | || ||||| |||||||| ||||||
Sbjct  249  ATCTCCG-ACGATTTGGGACGGACCGTTTTGGAATGCTCGAAACGACGCCGTCATCTTCG  307

Query  237  CCGTCTCGTGTGTCCACTAGGAACATGATCACCAAACGTACGTAAGGAC---TGATGATC  293
            || |||||||| ||||||||||||||   ||||||||||||||||||||   ||||||||
Sbjct  308  CCTTCTCGTGTTTCCACTAGGAACAT---CACCAAACGTACGTAAGGACGACTGATGATC  364

Query  294  GATATAC  300
            |||||||
Sbjct  365  GATATAC  371



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13924166473


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5