BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939586

Length=820
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G02730.1 | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthas...   398    6e-110
  AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family ...   372    3e-102


> AT1G02730.1 | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like 
D5 | chr1:594573-598657 REVERSE LENGTH=3854
Length=3854

 Score =  398 bits (215),  Expect = 6e-110
 Identities = 247/263 (94%), Gaps = 0/263 (0%)
 Strand=Plus/Plus

Query  70    GTGGTGATAGAATCTGCTATGTTCAGTTCCCTCAGAGGTTTGGAGTTATTGACCCAAATG  129
             |||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct  2235  GTGGCGATAGAATCTGCTATGTTCAGTTCCCTCAGAGGTTTGAAGGTATTGACCCAAATG  2294

Query  130   ATCGTTATGCAAACCACCACACTGTCTTCTTTGATGTTAGTATGAGAGCTTTGGATGGAA  189
             ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  2295  ATCGTTATGCAAACCACAACACTGTCTTCTTTGATGTTAGTATGAGAGCTTTGGATGGAC  2354

Query  190   TTCAAGGTCCAATGTATGTGGGAACTGGCTGTATCTTCCGAAGAACAGCTCTCTACGGGT  249
             ||||||||||||||||||||||||||||||| ||||| || ||||||||||| || || |
Sbjct  2355  TTCAAGGTCCAATGTATGTGGGAACTGGCTGCATCTTTCGGAGAACAGCTCTTTATGGAT  2414

Query  250   TTAGCCCGCCGAGAGCAACTGAACATCATGGCTGGCTTGGAAGAAGAAAGGTCAAGATAT  309
             |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  2415  TTAGCCCGCCAAGAGCAACTGAACATCATGGCTGGCTTGGAAGAAGAAAAGTCAAGATAT  2474

Query  310   CGCTGAGGAAACCGAAGGCCATG  332
             ||||||||| ||| || ||||||
Sbjct  2475  CGCTGAGGAGACCAAAAGCCATG  2497


 Score =  320 bits (173),  Expect = 1e-86
 Identities = 210/228 (92%), Gaps = 2/228 (1%)
 Strand=Plus/Plus

Query  340   GAGTCGATATCTCGTTTACCTTGACTTCCAAGTCATCTACACCAGAAGAAGGAGAGGATG  399
             |||| |||||||| |||||||||||||||||||||||| |||||||||| ||||| ||||
Sbjct  3336  GAGTTGATATCTCATTTACCTTGACTTCCAAGTCATCTGCACCAGAAGATGGAGACGATG  3395

Query  400   AGTTTGCTGATCTGTATGCTGTGAAATGGAGCTTTTTGATGGTTCCTCCATTGTCGATCA  459
             ||||||| |||||||||| |||||||||||||||||||||||||||||||||  | ||||
Sbjct  3396  AGTTTGCGGATCTGTATGTTGTGAAATGGAGCTTTTTGATGGTTCCTCCATTAACTATCA  3455

Query  460   TGATGGTGAATATAATTGCGATTGCGGTGGGGCCT-GCGACGACTCTGTACAGTCCATTT  518
             ||||||||||||| ||||| |||||||||||| || |||| ||||||||||||||| |||
Sbjct  3456  TGATGGTGAATATGATTGCAATTGCGGTGGGG-CTAGCGAGGACTCTGTACAGTCCGTTT  3514

Query  519   CCGCAATGGAGTAAGCTTGTTGGAGGAGTGTTCTTCAGCTTTTGGGTg  566
             || || ||||||||||||||||||||||||||||||||||||||||||
Sbjct  3515  CCACAGTGGAGTAAGCTTGTTGGAGGAGTGTTCTTCAGCTTTTGGGTG  3562


> AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family 
protein | chr5:413520-416225 FORWARD LENGTH=1690
Length=1690

 Score =  372 bits (201),  Expect = 3e-102
 Identities = 236/252 (94%), Gaps = 5/252 (2%)
 Strand=Plus/Plus

Query  569   agacaaagagctgagaagagaagccgatagagaagagaaagGGCAAATATTTGCTCCAAA  628
             ||||||||||||||||||| ||| |   |||||||||||||| |||| ||||||||||||
Sbjct  1254  AGACAAAGAGCTGAGAAGAAAAG-C---AGAGAAGAGAAAGGCCAAAAATTTGCTCCAAA  1309

Query  629   ATGGTTTGATGAAACAGAGGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTGTACCA  688
             |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct  1310  ATGGTTTGATGAAACAGAAGAAGTCACTCCTACACCATGGGGTGATCTCGAAGTTTACCA  1369

Query  689   ATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCCGATAACTCTGAGGATACAACGGA  748
             |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||
Sbjct  1370  ATTCAATGGAAAGTACTCGGTGCACCGCGCCACAGCTGAAAACTCTGAGGATACAACCGA  1429

Query  749   TGTGAAGGTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAATCCTCGGG  808
             ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct  1430  TGTGAAGTTGACCCAATTCAACCCTTGGCAATTCCAAGATCTCTCTGCTTAATCCTTTGG  1489

Query  809   GTGCCATTTGTT  820
              |||||||||||
Sbjct  1490  -TGCCATTTGTT  1500



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 39936146865


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5