BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939587
Length=1066
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCLIN D7;1 | chr5:4170... 1327 0.0
> AT5G02110.1 | Symbols: CYCD7;1, CYCD7 | CYCLIN D7;1 | chr5:417022-418666
FORWARD LENGTH=1204
Length=1204
Score = 1327 bits (718), Expect = 0.0
Identities = 964/1079 (89%), Gaps = 32/1079 (3%)
Strand=Plus/Plus
Query 1 TCAAGCCGGTTCAG-TGCGAAATGGATAATCTACTCTGCGAAGAGTCATGGCCCTCGAGT 59
|||| ||||||||| | | ||||||||||||||||||||||||| || |||||| |||||
Sbjct 45 TCAAACCGGTTCAGTTTCCAAATGGATAATCTACTCTGCGAAGAATCTTGGCCCGCGAGT 104
Query 60 CCTTTAACCCCGGAGCCTTTACCAAACTTCCGTCACAGTTCTCACGACAATGACGTCGTG 119
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 105 CCTTTAACCCCGGAGCCTTTACCAAACTTCCGTCACCGTTCTCACGACAATGACGTCGTG 164
Query 120 GCGATGTATCCAGAGATAGACGCAGCGACGATGGAGGAAGCCATTGCTATGGACTTAGAG 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 AAGATGTATCCAGAGATAGACGCAGCGACGATGGAGGAAGCCATTGCTATGGACTTAGAG 224
Query 180 AAAGAGTTATGTTTTAGTAATTATGGAGACAAGTTTGTTGAATTTTTCGTCTCTAAGAAG 239
||||| |||||||||| ||| ||||||||||||||||||| ||||||||||| ||||||
Sbjct 225 AAAGAATTATGTTTTAACAATCATGGAGACAAGTTTGTTGAGTTTTTCGTCTCAAAGAAG 284
Query 240 TTAACCGATTATAGGTTTCAAGCCG-TTCAATGGCTAATCCAGACTCGGAGTCGGCTAAA 298
||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||
Sbjct 285 TTAACCGATTATAGGTTCCATG-CGTTTCAATGGCTAATCCAGACTCGGAGTCGGCTAAA 343
Query 299 TCTTTCATTTGAAACGGTATTTTCCGCCG-TAAATTGTTTTGATCGGTTCGTCTATATGA 357
|||||||| |||||||||||||||||||| | ||||||||||||||||||||||| ||||
Sbjct 344 TCTTTCATATGAAACGGTATTTTCCGCCGCT-AATTGTTTTGATCGGTTCGTCTACATGA 402
Query 358 CTTGTTGTGACGAATGGACGAATTGGATGGTGGAACTAGTTGCGGTAACTTCATTATCGA 417
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CTTGCTGTGACGAATGGACGAATTGGATGGTGGAACTAGTTGCGGTAACTTCATTATCGA 462
Query 418 TCGCATCAAAGTTCAATGAAGTTACAACCCCATTACTCGAAGAACTTGAAATGGAAGGTT 477
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 463 TCGCATCAAAGTTCAATGAAGTTACCACTCCATTACTCGAAGAACTTGAAATGGAAGGTT 522
Query 478 TAACTCATATGTTTCACGTCAATACTGTT-CTTCAGATGGAACTTATAATTTTGAAAGCT 536
||||||||||||||||||| ||||| ||| || ||||||||||| |||||||||||||||
Sbjct 523 TAACTCATATGTTTCACGTTAATACAGTTGCT-CAGATGGAACTCATAATTTTGAAAGCT 581
Query 537 CTCGAATGGCGTGTAAACTCGGTTACGAGTTATTCTTTTTCGCAAACCCTTGTGTCGAGG 596
|||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||| |
Sbjct 582 CTCGAATGGCGTGTGAACGCGGTTACGAGTTATACTTTTTCGCAAACCCTTGTGTCGAAG 641
Query 597 ATTGGTGTGGTAGGGGATTACATGATGATGAATCGAATTACAAATCATTTGAT-GAATGA 655
|| ||| |||| |||||| | ||||| ||||||||||||||||||||| || | || ||
Sbjct 642 ATCGGTATGGTTGGGGATCATATGATCATGAATCGAATTACAAATCATCTGCTTGA-TG- 699
Query 656 TT-TATGCGATTTGAAGATTCTTCAATATCCACCAAGCGTTGTGGC-AGCTGCGGCTATG 713
|| |||||||||| || || |||||||| ||||||||||||||||| | |||| |||||
Sbjct 700 TTATATGCGATTTAAAAATGCTTCAATACCCACCAAGCGTTGTGGCCA-CTGCTGCTATA 758
Query 714 TTGAATGTTCTGGATG-AAGA-AAGGC-TGAA-AGATAA-TATCATGAAACTCTTTGGAC 768
| || | | || ||| |||| |||| || ||| || ||||||||| ||||||| ||
Sbjct 759 TGGA-T-T-CTC-ATGGAAGACAAGGTGTGTCGAGA-AAGTATCATGAATCTCTTTGAAC 813
Query 769 AAGAA-CAAAAGGAAAAAATTGAGAAATGTGTCGAAGTGATGAAAAATCGAAACAGCGAT 827
|| || || ||||||||||| | ||||||||| || | ||||||||||||| ||| |||
Sbjct 814 AA-AATCATAAGGAAAAAATCGTGAAATGTGTTGATGGGATGAAAAATCGAGACATTGAT 872
Query 828 CATCAATTGTCTATAAGAACAT-CATGTGAAGGGAAGAGTATTTTGAGGT-TGTTGCAGA 885
||||| | ||| | ||||| || || ||||||||| ||||||| |||| | ||||||||
Sbjct 873 CATCAGTCGTCGAGAAGAAGATACA-GTGAAGGGAGGAGTATTCTGAG-TCTGTTGCAGC 930
Query 886 GAGGTGATGTGATGAACATGAATGATGACTATAACGTTGAA-AGTCTCTCTAAAATATTT 944
|||| ||||||||||| ||||||| || |||||||||||| | |||||||||||| |||
Sbjct 931 GAGGCGATGTGATGAATATGAATGGGGATTATAACGTTGAAGA-TCTCTCTAAAATCTTT 989
Query 945 CAGATTTTCCGATACGAAAACAAGAAGAGAGACAGAGCAAACCACCAAGACAACATTCGT 1004
|||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||
Sbjct 990 CAGATTTTCCGATACGAAAAGAAGAAGAGGGATAGAGGAAACCACCAAGACAACATTCGT 1049
Query 1005 CCGGCAAAAAGAATGACATTTGTTATGTCAAACTACATTTAGCACTTTACGAAAAGAAG 1063
|||||||||||||||||| ||| |||||||| ||||||||||| |||| |||| ||||
Sbjct 1050 CCGGCAAAAAGAATGACAATTGAAATGTCAAATTACATTTAGCATTTTATGAAA-GAAG 1107
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52208566800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5