BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939588

Length=373
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02120.1 | Symbols: OHP | one helix protein | chr5:419091-41...   518    2e-146


> AT5G02120.1 | Symbols: OHP | one helix protein | chr5:419091-419773 
FORWARD LENGTH=526
Length=526

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 334/360 (93%), Gaps = 3/360 (1%)
 Strand=Plus/Plus

Query  17   AAA-AATGAGCTCGTCGCCGTTATCGTCATCTTTCTTTCATCCGCTTTCGACCTTGTCGG  75
            ||| ||||||||||||||||||||| |||||| |||||||||| || |||||||||||| 
Sbjct  49   AAATAATGAGCTCGTCGCCGTTATCTTCATCTCTCTTTCATCCTCTGTCGACCTTGTCGA  108

Query  76   CTCAAGGCCATGGTCGGAGGCAGAACTTCTGTTTCAGTCGTAAGCAACAATCTGTCGTTG  135
            ||||  ||||||||||||| |||||| ||||||||| ||| ||||||||| || ||||||
Sbjct  109  CTCATTGCCATGGTCGGAGACAGAACCTCTGTTTCAATCGGAAGCAACAACCTTTCGTTG  168

Query  136  TCCGAGCCGCCAAACTTCCTGAAGGAGTGATATTGCCAAAAGTACAACCCAAATCTCAAC  195
            || ||||||| |||||||||||||| |||||| ||||||||| |||||||||||||||||
Sbjct  169  TCAGAGCCGCAAAACTTCCTGAAGGGGTGATAGTGCCAAAAGCACAACCCAAATCTCAAC  228

Query  196  CTGCGTTTCTGGGATTCACACAAACAGCTGAGATATGGAACTCAAGAGCTTGCATGATTG  255
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  229  CTGCGTTTCTGGGATTCACACAAACAGCTGAGATATGGAACTCACGAGCTTGCATGATTG  288

Query  256  GTCTCATCGGTACTTTCATCGTCGAACTGATTCTGAACAAGGGAATACTTGAAGTGATCG  315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  289  GTCTCATCGGTACTTTCATCGTCGAACTGATTCTGAACAAGGGAATACTTGAACTGATCG  348

Query  316  GTGTAGAGATTGGGAAAGGGCTTGATCTTCCTCTATAATGTA-A-CACTGTGTGTGTTCT  373
            ||||||||||||||||||| || ||||||||||||||||||| | |||||| ||||||||
Sbjct  349  GTGTAGAGATTGGGAAAGGACTCGATCTTCCTCTATAATGTATATCACTGTTTGTGTTCT  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17543444401


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5