BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939592
Length=434
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 680 0.0
> AT5G02160.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN:
23 plant structures; EXPRESSED DURING: 13 growth stages;
Has 121 Blast hits to 121 proteins in 17 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:426226-427297
FORWARD LENGTH=829
Length=829
Score = 680 bits (368), Expect = 0.0
Identities = 413/434 (95%), Gaps = 5/434 (1%)
Strand=Plus/Plus
Query 1 TCACTTAAAAACCCTAAATCATGGCGATCGCACCGGCAATGCAGACGACGTTCGTGTCAT 60
|||||| |||||||||||| ||| |||||||||||||| |||||||||||||||||||||
Sbjct 148 TCACTT-AAAACCCTAAATTATGACGATCGCACCGGCATTGCAGACGACGTTCGTGTCAT 206
Query 61 CGACCAGCTTCCTGAAACATTCTTCTTCGTGGGGATCATCATCCTCACCGAACAATGTGA 120
| |||| ||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 207 CAACCAACTTCCTGAAACATTCTTCTTCGTGGGGATCA-C--CATCACCGAACAATGTGA 263
Query 121 TTCTTCCCAAAAACAAGAGATCGTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCT 180
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 264 TTCTTCCCAAAAACAAGAGATCTTCTTCCTCCGTAGTTGTCGCCGCCGTCGGTGATGTCT 323
Query 181 CTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CTTCTGACGGAACAATCTACTTAATCGGCGGAGCCATCGCCGTTGCACTCGTCGGAACTG 383
Query 241 CATTTCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTG 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CATTCCCGATCCTCTTCAAACGCAAAGACACGTGTCCGGAATGTGACGGAGCAGGATTTG 443
Query 301 TGAGGAAAGGAGGAGTGACTCTGAGAGCGAATGCCGCACGCAAGGATCTTCCTCAGATCG 360
|||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 444 TGAGGAAAGGAGGAGTGACTCTGAGAGCCAACGCCGCACGGAAGGATCTTCCTCAGATCG 503
Query 361 TTTGTGCTAACTGCAATGGACTGGGAAAGCTTAACCAGATTGATAAATCATAAGAGAGTC 420
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 504 TTTGTGCTAACTGCAATGGACTCGGAAAGCTTAACCAGATTGATAAATCATAAGTCT-TC 562
Query 421 TTCATATTTATGTA 434
||||||| ||||||
Sbjct 563 TTCATATATATGTA 576
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20609777090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5