BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939595
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02190.1 | Symbols: EMB24, ATASP38, PCS1 | Eukaryotic aspart... 2082 0.0
> AT5G02190.1 | Symbols: EMB24, ATASP38, PCS1 | Eukaryotic aspartyl
protease family protein | chr5:435211-436897 FORWARD LENGTH=1687
Length=1687
Score = 2082 bits (1127), Expect = 0.0
Identities = 1320/1410 (94%), Gaps = 25/1410 (2%)
Strand=Plus/Plus
Query 5 TCAATATATCCTCATCATGTTCTCAAGATTCCATGCTCTGTTTCCtcttcttcttctcct 64
|||| ||||| ||||||||||||||||||||||||||||| | ||||||||||
Sbjct 96 TCAAAATATCGTCATCATGTTCTCAAGATTCCATGCTCTG--------T-TTCTTCTCCT 146
Query 65 tgtaattctttcaataagaacctataaatgtg-------a-c-tcttcttcttcttcttc 115
|| |||||||| ||||||| |||||||||| | | |||||||||||||||||
Sbjct 147 TG---TTCTTTCAGTAAGAACATATAAATGTGTATCTTCATCTTCTTCTTCTTCTTCTTC 203
Query 116 tttctcgttttcttca--tt-ttcttcatcttcttctCAAACTCTTGTTTTGCCTCTAAA 172
|||||| || |||||| || |||||| |||||||||||||||||||| |||||||||||
Sbjct 204 TTTCTCATTCTCTTCATTTTCTTCTTCGTCTTCTTCTCAAACTCTTGTCTTGCCTCTAAA 263
Query 173 GACCCGAATAACCCCAACGGATCATCAACCCACCGACAAACTTCATTTCCACCACAACGT 232
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 264 GACCCGAATAACCCCAACGGATCATCGACCCACCGACAAACTTCATTTCCACCACAACGT 323
Query 233 CACTCTCACTGTTACTCTCACCGTCGGTACTCCTCCTCAAAACATCTCCATGGTCATTGA 292
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 CACTCTCACCGTTACTCTCACCGTCGGTACTCCTCCTCAAAACATCTCCATGGTCATTGA 383
Query 293 CACTGGCAGCGAACTCTCCTGGCTTCGTTGCAACCGTTCCTCAAACCCAAACCCGGTTAA 352
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 CACTGGCAGTGAACTCTCCTGGCTTCGTTGCAACCGTTCCTCAAACCCAAACCCGGTTAA 443
Query 353 TAATTTCGACCCGACCCGTTCTTCCTCTTATTCTCCAATCCCCTGTTCCTCACCCACTTG 412
||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 444 CAATTTTGACCCGACCCGTTCCTCCTCTTATTCCCCAATCCCCTGTTCCTCACCCACTTG 503
Query 413 TCGGACCCGGACCCGAGACTTCCTCATACCCGCTTCTTGCGATTCAGACAAACTCTGCCA 472
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 504 TCGTACCCGGACCCGAGACTTCCTCATACCCGCTTCTTGCGATTCAGACAAACTCTGCCA 563
Query 473 CGCAACTCTTTCCTACGCTGACGCTTCCTCCTCCGAAGGTAACCTCGCCGCCGAGATTTT 532
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 564 CGCAACTCTATCCTACGCCGACGCTTCCTCCTCCGAAGGTAACCTCGCCGCCGAGATTTT 623
Query 533 CCACTTCGGAAACTCGACCAACGACTCCAACCTCATTTTCGGGTGTATGGGATCCGTATC 592
||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 624 CCACTTCGGAAACTCCACCAACGACTCCAATCTCATTTTCGGGTGTATGGGTTCCGTATC 683
Query 593 CGGATCCGACCCGGAAGAAGATACCAAAACAACCGGGTTATTGGGTATGAACCGTGGTTC 652
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 684 CGGATCCGACCCGGAAGAAGATACCAAAACAACTGGGTTATTGGGTATGAACCGTGGTTC 743
Query 653 CCTCTCTTTCATCTCTCAGATGGGTTTCCCCAAATTCTCTTATTGCATCTCCGGCACCGA 712
||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 744 CCTCTCTTTTATCTCTCAAATGGGTTTCCCCAAATTCTCTTATTGCATCTCCGGCACCGA 803
Query 713 CGATTTCCCGGGGTTTCTTCTCCTCGGCGACTCTAATTTCACGTGGTTAACGCCGTTAAA 772
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 804 CGACTTCCCGGGGTTTCTTCTCCTCGGCGACTCTAACTTCACGTGGTTAACGCCGTTAAA 863
Query 773 TTACACGCCGTTAATCCGGATCTCCACGCCGTTACCTTACTTCGACCGTGTAGCTTACAC 832
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 864 TTACACGCCGTTAATTCGTATCTCTACGCCGTTACCTTACTTCGACCGTGTAGCTTACAC 923
Query 833 CGTCCAGCTCACGGGTATTAAAGTTAACGGTAAGCTTTTACCCATCCCTAAATCGGTCCT 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 924 CGTCCAGCTCACGGGTATTAAAGTTAACGGTAAGCTTTTACCCATCCCTAAATCGGTTCT 983
Query 893 CCTACCGGATCACACCGGTGCTGGTCAAACCATGGTTGATTCCGGTACTCAGTTTACTTT 952
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 984 CGTACCGGATCATACCGGTGCTGGTCAAACCATGGTTGATTCCGGTACTCAGTTTACTTT 1043
Query 953 CTTGCTTGGACCGGTTTACACCGCTCTTCGATCTGATTTCTTAAACCAGACAAACGGGAT 1012
| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||| ||
Sbjct 1044 CCTGCTTGGACCGGTTTACACCGCACTTCGATCCCATTTCTTAAACCGGACAAACGGAAT 1103
Query 1013 CTTAACGGTTTACGAAGACCCGGATTTTGTTTTCCAAGGAACCATGGATTTGTGCTACCG 1072
||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||
Sbjct 1104 CTTAACGGTTTACGAAGACCCAGATTTTGTTTTCCAAGGAACCATGGATTTGTGTTATCG 1163
Query 1073 GATTTCACCGTTTCGGATTCGGACCGGGATTCTCCACCGGTTACCAACGGTTTCTCTGGT 1132
|||||||||| |||| || ||| |||| ||||||||||| |||||||| |||||||||||
Sbjct 1164 GATTTCACCGGTTCGTATACGGTCCGGAATTCTCCACCGTTTACCAACAGTTTCTCTGGT 1223
Query 1133 TTTTGAAGGAGCTGAGATAGCGGTTTCGGGTCAGCCACTATTATACCGAGTCCCACATCT 1192
||| |||||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1224 TTTCGAAGGAGCCGAGATAGCGGTTTCGGGTCAGCCGCTATTGTACCGAGTCCCGCATCT 1283
Query 1193 CACGGCTGGGAACGATTCGGTTTATTGTTTCACATTTGGAAACTCCGATCTTATGGGAAT 1252
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1284 CACGGTTGGAAACGATTCGGTTTATTGTTTCACATTTGGAAACTCCGACCTTATGGGAAT 1343
Query 1253 GGAAGCATACGTGATTGGACACCATCATCAGCAGAACATGTGGATCGAATTTGATCTACA 1312
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1344 GGAGGCTTACGTGATTGGACATCATCATCAGCAGAACATGTGGATCGAATTTGATCTACA 1403
Query 1313 GAGATCAAGAATCGGTTTAGCTCCGGTACAGTGTGATGTATCTGGTCAAAGACTCGGAAT 1372
||||||||||||||||||||||||||| | ||||||||||| ||||| |||||||||||
Sbjct 1404 AAGATCAAGAATCGGTTTAGCTCCGGTAGAATGTGATGTATCGGGTCAGAGACTCGGAAT 1463
Query 1373 CGGATCGTAAAACCATAGATAACCTGTGTG 1402
||||||||||| |||||||||||| |||||
Sbjct 1464 CGGATCGTAAA-CCATAGATAACCAGTGTG 1492
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69075949920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5