BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939600
Length=883
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02230.1 | Symbols: | Haloacid dehalogenase-like hydrolase ... 1435 0.0
> AT5G02230.1 | Symbols: | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:448105-450654 FORWARD LENGTH=1103
Length=1103
Score = 1435 bits (777), Expect = 0.0
Identities = 841/871 (97%), Gaps = 8/871 (1%)
Strand=Plus/Plus
Query 18 AAAATGGAGTTCGAGAACCGGTACGGACTTGCAACGTCGCAGAAGTACGACTGTCTCTTG 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAATGGAGTTCGAGAACCGGTACGGACTTGCAACGTCGCAGAAGTACGACTGTCTCTTG 170
Query 78 TTCGATTTGGACGATACTCTTTATCCTCTTAGCTCCGGAATCGCAAGAGAATGTGGGAAC 137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 TTCGATTTGGACGATACTCTTTATCCTCTTAGCTCCGGAATCGCAAGAGAATGTGGGAAC 230
Query 138 AACATCAAAGATTACATGACCGAGAAACTCGGTATACCAAAGGACAAAATCTTCGAATTG 197
|||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 231 AACATCAAAGATTACATGACCGAGAAACTCGGTATACCTAAGGACAAAATCGTCGAATTG 290
Query 198 TCCGATCTTCTCTACAAGAACTATGGAACAACAATGGCTGGTCTTAGAGCCATCGGATAT 257
|| |||||||| ||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 291 TCTGATCTTCTATACAAGAACTATGGAACAACAATGGCTGGTCTTAGGGCGATCGGATAT 350
Query 258 GAATTTGACTACGATGAGTACCACAGTTTCGTCCACGGTCGTTTACCATACGACAACATA 317
|||||||||||||||||||||||||| |||||||||||||||||||| || |||||||||
Sbjct 351 GAATTTGACTACGATGAGTACCACAGCTTCGTCCACGGTCGTTTACCCTATGACAACATA 410
Query 318 AAACCCGACTCT-GTTCTTCGCAGCCTCTTGCTTAGCCTCCCTCTCCGCAAAGTCATCTT 376
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 AAACCCGAC-CTTGTTCTTCGCAGCCTCTTGCTTAGCCTCCCTCTCCGCAAAGTCATCTT 469
Query 377 TACCAACGCGGACAGAGTTCACGCGGCCAAGGCGTTGAAGAAGTTGGGACTAGAGGATTG 436
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 470 TACCAACGCGGACAGAGTTCACGCGGCCAAGGCGTTGAAGAAGTTGGGATTAGAGGATTG 529
Query 437 TTTCGAAGGAATCATATGTTTCGAAACGCTAAACC-CGACGCACACAAACGCTGCGTCTA 495
||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||
Sbjct 530 TTTCGAAGGAATCATATGTTTCGAAACGCTAAACCTC-ATGCACACAAACGCTGCGTCTA 588
Query 496 ACAATTCCGAGATTTTTGATATCGTTGAACATTTTAACCGGTCTGAACCGGTCGGTTCAC 555
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 589 ACAATTCCGAGATTTTTGATATCGTTGGACATTTTAACCGGTCTGAACCGGTCGGTTCAC 648
Query 556 TTCCCAAAACGCCTGTTGTGTGTAAACCATCTGAATCTGCTATCGAGAAAGCTCTTGAAA 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 TTCCCAAAACGCCTGTTGTGTGTAAACCATCTGAATCTGCTATCGAGAAAGCTCTTGAAA 708
Query 616 TCGCCAATATTGATCCTACCCGAACGCTGTTCTTTGAGGACAGTGTCCGAAACGTACAAG 675
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TCGCCAATATTGATCCTAACCGAACGCTGTTCTTTGAGGACAGTGTCCGAAACGTACAAG 768
Query 676 CTGGAAAACGCGTAGGTCTTCACACGGTTCTGGTTGGTAAATCAACCAAAGTCAAAGGAG 735
||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 769 CTGGAAAACGCGTTGGTCTTTACACGGTTCTGGTTGGTAAATCGACCAAAGTCAAAGGAG 828
Query 736 CAGATTACGCGTTGGAAAACATTCACAACATGAAAGAGGCCATACCGGAGTTATGGGAAG 795
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 829 CGGATTACGCGTTGGAAAACATTCACAACATGAAAGAGGCGATACCGGAGTTATGGGAAT 888
Query 796 CCGACAGGAAGTCGCCGGATGTTGGATATTCCGGCAAGGTCGCCGTTGAGACATCTGTTA 855
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 889 CCGACAGGAAATCGTCGGATGTTGGATATTCCGGCAAGGTCGCCGTTGAGACTTCTGTTA 948
Query 856 GAGCTTAGGAG---TACTGTTTCGCTCGTTG 883
||||||||||| ||||||||||| |||||
Sbjct 949 GAGCTTAGGAGGAGTACTGTTTCGC-CGTTG 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43100898126
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5