BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939601
Length=802
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02240.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1282 0.0
> AT5G02240.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:451423-453157 FORWARD LENGTH=1014
Length=1014
Score = 1282 bits (694), Expect = 0.0
Identities = 759/791 (96%), Gaps = 2/791 (0%)
Strand=Plus/Plus
Query 10 AAGCTTCTTCAATGGCGAATCTTCCCACCGTTCTCGTTACCGGCGCTAGTGGAC-GAACA 68
|||||||| |||||||||||||||||||||||||||| |||||||||||||| | |||||
Sbjct 69 AAGCTTCTACAATGGCGAATCTTCCCACCGTTCTCGTCACCGGCGCTAGTGG-CAGAACA 127
Query 69 GGTCAGATTGTGTATAAGAAGCTGAAGGAGGGGTCAGACAAGTTTGTAGCAAAGGGTTTA 128
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 GGCCAGATTGTGTATAAGAAGCTGAAGGAGGGGTCAGACAAGTTTGTAGCAAAGGGTTTA 187
Query 129 GTTAGAAGTGCTCAAGGAAAAGAGAAAATTGGAGGAGAAGCTGATGTCTTCATTGGGGAT 188
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 188 GTTAGAAGTGCTCAAGGAAAAGAGAAAATTGGAGGAGAAGCTGATGTTTTCATTGGGGAT 247
Query 189 ATAACAGATGCTGATAGCATTAATCCTGCGTTTGAAGGGATCGATGCGCTTGTGATTCTC 248
||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||
Sbjct 248 ATAACAGATGCTGATAGCATTAACCCTGCGTTTCAAGGAATCGATGCGCTTGTGATTCTC 307
Query 249 ACGAGTGCTGTGCCTAAAATGAAACCTGGTTTTGATCCCACTAAAGGTGGAAGACCTGAG 308
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 308 ACTAGTGCTGTGCCTAAAATGAAACCTGGTTTTGATCCCACTAAAGGTGGAAGACCTGAG 367
Query 309 TTCATTTTCGAAGATGGACAGTATCCTGAACAAGTTGATTTTATTGGACAGAAGAATCAA 368
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 368 TTCATTTTCGAAGATGGACAGTATCCTGAACAAGTTGATTGGATTGGACAGAAGAATCAA 427
Query 369 ATTGATGCAGCCAAGGTTGCTGGTGTTAAGCATATTGTCGTAGTCGGGTCAATGGGTGGT 428
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 428 ATTGATGCAGCCAAGGTTGCTGGTGTTAAGCATATTGTCGTGGTCGGGTCAATGGGTGGT 487
Query 429 ACCAATCCGGATCATCCTTTGAACAAACTGGGAAATGGGAATATACTGGTTTGGAAGAGA 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 ACCAATCCGGATCATCCTTTGAACAAACTGGGAAATGGGAATATACTGGTTTGGAAGAGA 547
Query 489 AAGGCTGAACAGTATCTTGCTGATTCTGGAACTCCTTACACAATAATCAGAGCTGGAGGA 548
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 548 AAGGCTGAACAGTACCTTGCTGATTCTGGAACTCCTTACACAATTATCAGAGCTGGAGGA 607
Query 549 CTTCTAGATAAGGAAGGAGGTGTACGAGAGCTGATAGTTGGTAAAGACGATGAGCTACTT 608
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 608 CTTCTAGATAAGGAAGGCGGTGTACGAGAGCTGCTAGTTGGTAAAGACGATGAGCTACTT 667
Query 609 CAGACAGACACAAAAACCGTCCCGAGGGCTGATGTTGCGGAAGTCTGCATCCAGGCATTG 668
||||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 668 CAGACAGACACGAAAACCGTCCCCAGGGCTGATGTTGCAGAAGTCTGCATTCAGGCATTG 727
Query 669 CTGTTCGAGGAAGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGAACCAGT 728
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 728 CTGTTCGAGGAGGCCAAGAACAAAGCTTTCGATCTCGGCTCAAAGCCAGAGGGAACCAGT 787
Query 729 TCTCCGACTAAAGACTTTAAGGCTCTCTTCTCTCAAGTCACTTCTCGATTCTAAATCTTT 788
| || || |||||||| ||||||||||||||||||||||| ||||| || |||||| ||
Sbjct 788 ACCCCAACCAAAGACTTCAAGGCTCTCTTCTCTCAAGTCACCTCTCGTTTTTAAATCATT 847
Query 789 ATCTTTGCTGC 799
||||||| |||
Sbjct 848 ATCTTTGTTGC 858
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39031932219
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5