BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939605
Length=820
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02260.1 | Symbols: ATEXPA9, EXP9, ATEXP9, ATHEXP ALPHA 1.10... 1266 0.0
> AT5G02260.1 | Symbols: ATEXPA9, EXP9, ATEXP9, ATHEXP ALPHA 1.10,
EXPA9 | expansin A9 | chr5:463158-465246 FORWARD LENGTH=1249
Length=1249
Score = 1266 bits (685), Expect = 0.0
Identities = 777/822 (95%), Gaps = 4/822 (0%)
Strand=Plus/Plus
Query 1 TTTTTCCGTACTTAA-G-CAAACAAATGGCGGCGAGAGTAATAACATTAATGGCGGTTAT 58
||||||||||| || | | ||||||||||||||| |||||| ||||| |||||||||||
Sbjct 44 TTTTTCCGTAC-CAAGGTC-AACAAATGGCGGCGAAAGTAATTACATTTATGGCGGTTAT 101
Query 59 GGTGGTTACTGCCTTGACGGTGAACGCCAAAATCCCCGGAGTTTACACCGGTGGTCCCTG 118
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 102 GGTGGTTACTGCCTTTACGGCCAACGCCAAAATCCCCGGAGTTTACACCGGTGGTCCTTG 161
Query 119 GATCAATGCTCACGCCACCTTCTACGGCGAGGCTGACGCTTCCGGCACTATGGGTGGTGC 178
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 162 GATCAATGCTCACGCCACCTTCTACGGTGAAGCTGACGCTTCCGGCACTATGGGTGGTGC 221
Query 179 GTGTGGGTACGGGAATTTGTATAGCCAAGGTTACGGTGTGAACACAGCGGCTTTAAGCAC 238
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 222 GTGTGGGTACGGGAATTTGTATAGCCAAGGTTACGGAGTGAACACGGCGGCTTTAAGCAC 281
Query 239 TGCCTTATTCAACAATGGTTTAAGTTGTGGCTCTTGCTATGAGCTCAAGTGTGTCAATGA 298
||||||||||||||||||||| |||||||||||||||| |||||| |||||| |||||||
Sbjct 282 TGCCTTATTCAACAATGGTTTGAGTTGTGGCTCTTGCTTTGAGCTTAAGTGTATCAATGA 341
Query 299 TCCTGGATGGTGTCTTCCCGGAAACCCATCAATCCTTATCACCGCCACTAATTTCTGCCC 358
||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 342 TCCAGGATGGTGTCTTCCTGGAAACCCATCAATTCTTATCACCGCCACTAATTTCTGCCC 401
Query 359 TCCCAACTTTAATCAAGCTAGCGATGATGGTGGTTGGTGTAACCCTCCTCGTGAGCACTT 418
||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 402 TCCTAACTTTAATCAAGCTAGCGACAATGGTGGTTGGTGTAATCCTCCTCGTGAGCACTT 461
Query 419 TGATCTCGCCATGCCTATGTTTCTATCCATCGCTAAGTATAAGGCCGGTATCGTCCCCGT 478
||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 462 TGATCTCGCTATGCCTATGTTTCTTTCCATCGCTAAGTATAAGGCTGGTATCGTCCCCGT 521
Query 479 CTCTTACCGCAGGATCCCATGTAGGAAGAAGGGAGGTATAAGATTCACAATCAATGGATT 538
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 522 CTCTTACCGCAGGATCCCATGTAGGAAGAAGGGAGGAATCAGATTCACAATCAATGGATT 581
Query 539 CAGGTACTTCAACTTGGTGCTGGTCACTAACGTAGCCGGAGCTGGCGACGTCATTAAGGT 598
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 582 CAAGTACTTCAACTTGGTGCTGGTCACTAACGTAGCCGGAGCTGGAGACGTCATTAAGGT 641
Query 599 GAGTGTGAAAGGAACCAACACACAATGGTTAGATCTGAGCCGGAACTGGGGACAAAACTG 658
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 642 GAGTGTGAAAGGATCCAACACACAATGGTTAGATCTGAGCCGGAACTGGGGACAAAACTG 701
Query 659 GCAATCCAACGCAGTTCTTATCGGCCAATCTCTTTCTTTCCGAGTCAAAACCTCCGATGG 718
||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 702 GCAATCCAACGCACTTCTTGTCGGCCAATCTCTTTCTTTCCGAGTCAAAACCTCTGATGG 761
Query 719 CCGAAGCTCCACCTCCAACAACATTGCTCCCAGTAACTGGCAATTTGGTCAGACTTACTC 778
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 762 CCGAAGCTCCACCTCCAACAACATTGCTCCCAGTAACTGGCAATTTGGCCAGACCTACTC 821
Query 779 CGGCAAGAATTTCCGCGTTTGATTCCTAGAAAACGAAAAAGA 820
||||||||| |||||||| ||||| |||||| | ||||||||
Sbjct 822 CGGCAAGAACTTCCGCGTCTGATTTCTAGAATATGAAAAAGA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39936146865
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5