BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939611
Length=670
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02340.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 267 1e-70
AT2G13950.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 211 6e-54
AT4G10370.1 | Symbols: | Cysteine/Histidine-rich C1 domain fam... 128 7e-29
> AT5G02340.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr5:492255-494150 REVERSE LENGTH=1896
Length=1896
Score = 267 bits (144), Expect = 1e-70
Identities = 403/522 (77%), Gaps = 42/522 (8%)
Strand=Plus/Plus
Query 138 TCCGGTGGAGACAACCGCCCTACTCAACCTCTTTT-CTTATGTCCCTCT-TTACGTCTCA 195
||||||| ||||| || | || | ||||||||||| ||| ||| ||||| |||||| |||
Sbjct 76 TCCGGTGAAGACATCC-CTCT-C-CAACCTCTTTTCCTT-TGT-CCTCTCTTACGTGTCA 130
Query 196 AAGTTCACCAG-TTAAAACATAAGAAGG--AAGCTTCAT-CTGA-TAA--CATGT-TCCC 247
|| ||| ||| |||| || | ||| || || || ||| || | | | |||
Sbjct 131 AAACTCA-CAGCCAAAAAGATCCGGAGGCTAA--TT-ATGATGACCAAGGC-TTTGTCCT 185
Query 248 GCTCAATACTTCCCCACACTTCCCCAGCAG-TGATCAACAAGTCCAATATCTGCTTGATT 306
| || ||| |||||| |||||||| ||| | ||||| ||||||||| ||| |||||||||
Sbjct 186 GTTCGATATTTCCCCTCACTTCCCAAGC-GCTGATCCACAAGTCCACTATATGCTTGATT 244
Query 307 C-CGACAGCCATGATGTTATATGTAAGCTTCCTGTTGTCCCTCTCTTTTGGTGCAACAAT 365
| | ||| || | | |||| |||||||| |||||| |||||||||||||||||||||||
Sbjct 245 CTC-ACAACCGCGGTCTTATCTGTAAGCTCCCTGTTCTCCCTCTCTTTTGGTGCAACAAT 303
Query 366 AAAGAATCTGATAATGATGATGGGGAATTTTATTGTGGTGCATGTTATGGCTCAAAACAT 425
|||||| || | | || | || || || | |||| ||||||| | | |||| | |
Sbjct 304 AAAGAACCT-A-A-TG--G-TGCCGACTTCTGTTGTAGTGCATGCAAAATCACAAATCTT 357
Query 426 GGTACAAACTATTATTTTTGT-CTCACATGTGGTAAACAA-TTCCACAAAGAATGTGTGG 483
|| ||| ||| ||||||||| | ||||||| ||||| || |||||||||||||||||||
Sbjct 358 GGCACAGCCTACTATTTTTGTAC-CACATGTCGTAAA-AAGTTCCACAAAGAATGTGTGG 415
Query 484 AGTCTCCATTTGAGATCAAACACCCTTCCTATCCTTTTCAATCTCTCCAGCTTTATTGTC 543
|||||||| |||| |||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 416 AGTCTCCACTTGAAATCAAACATCCTTCCTATCCTTTTCAATCTCTCCAACTTTATAGTT 475
Query 544 CTCCCTTGAGCCTATTGTT--TTGCAACTGTTGTGAAACAAATTTCCTTCAAATG-TCTT 600
||||||| ||| |||| ||||| |||||||| | || ||||| | ||| | ||
Sbjct 476 CTCCCTTT-GCCC-TTGTGAATTGCATTTGTTGTGATATAAGTTTCCAAGACATGAT-TT 532
Query 601 ATCAATGTCCTACCTACAA-CTTAACTATGCATCCGGTTTGT 641
|||| | | |||| ||||| || | ||||||||| ||||||
Sbjct 533 ATCATTCTTCTACTTACAAACTGAG-TATGCATCCTGTTTGT 573
> AT2G13950.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr2:5857536-5859249 FORWARD LENGTH=1554
Length=1554
Score = 211 bits (114), Expect = 6e-54
Identities = 241/299 (81%), Gaps = 22/299 (7%)
Strand=Plus/Plus
Query 298 TGCTTGATTC-CGACAGCCATGATGTTATATGTAAGCTTCCTGTTGTCCCTCTCTTTTGG 356
|||||||||| | ||| || | | |||| |||||||| |||||||||||||||||||||
Sbjct 2 TGCTTGATTCTC-ACAACCGCGGTCTTATCTGTAAGCTCCCTGTTGTCCCTCTCTTTTGG 60
Query 357 TGCAACAATAAAGAATCTGATAATGATGATGGGGAATTTTATTGTGGTGCATGTTATGGC 416
||||||||||||||| || | | || | || || || | |||| ||||||| | |
Sbjct 61 TGCAACAATAAAGAACCT-A-A-TG--G-TGCCGACTTCTGTTGTAGTGCATGCAAA--C 112
Query 417 TCA-AAA-CATGGTACAAACTATTATTTTTGT-CTCACATGTGGTAAACAA-TTCCACAA 472
||| ||| | ||| ||| ||| ||||||||| | ||||||| |||| || ||||||||
Sbjct 113 TCACAAATCTTGGCACAGCCTACTATTTTTGTGC-CACATGTCGTAAG-AAGTTCCACAA 170
Query 473 AGAATGTGTGGAGTCTCCATTTGAGATCAAACACCCTTCCTATCCTTTTCAATCTCTCCA 532
||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||
Sbjct 171 AGAATGTGTGGAGTCTCCACTTGAAATCAAACACCCTTCCTATCCCTTTCAATCTCTCCA 230
Query 533 GCTTTATTGTCCTCCCTTGAGCCTATTGTT--TTGCA-ACTGTTGTGAAACAAATTTCC 588
|||||| || ||||||| || | |||| ||||| | |||||||| | || |||||
Sbjct 231 ACTTTATAGTTCTCCCTTT-GC-TCTTGTGAATTGCATA-TGTTGTGATATAAGTTTCC 286
> AT4G10370.1 | Symbols: | Cysteine/Histidine-rich C1 domain family
protein | chr4:6423577-6425661 REVERSE LENGTH=2085
Length=2085
Score = 128 bits (69), Expect = 7e-29
Identities = 286/385 (74%), Gaps = 37/385 (10%)
Strand=Plus/Plus
Query 273 AGCAGTGATCAACAA-GTCCAATATCTGCTTGATTCCGACAGCCATGATGTTATATGTAA 331
||| ||||||||||| || ||| | ||||||||| |||| | | |||| ||| |||||
Sbjct 298 AGCGGTGATCAACAAGGT-GAATCTTTGCTTGATTGCGAC-G--AAGATGGTATCTGTAA 353
Query 332 GCTTCCTGTTGTCCCTCTCTTTTGGTGCAACAATAAAGAATCTGATAATGATGATGGGGA 391
|| ||||| |||||||||||||||||||||||||||||| |||| | | | | |
Sbjct 354 ACTCCCTGTAGTCCCTCTCTTTTGGTGCAACAATAAAGAAAGTGAT--TC-TC--GCG-A 407
Query 392 ATTTTATTGTGGTGCATGTTATG-GCT-CAAAACATG-GTACAAACTATTATTTTTGTCT 448
||| | || |||| ||| | | | | ||| | | | | | ||||||| |||||
Sbjct 408 ATTCCAGTGCGGTGGATGC-A-GAGATTCAATGC-TCAGCGCTAGCTATTATGCATGTCT 464
Query 449 -CACATGTGGTAAACAATTCCACAAAGAATGTGTGGAGTCTCCAT-TTGAGATCAAACAC 506
|| ||||| ||| ||||||||||||||||||| |||||||| | |||| |||||||||
Sbjct 465 TCA-ATGTGAAAAAAAATTCCACAAAGAATGTGTAGAGTCTCC-TCTTGAAATCAAACAC 522
Query 507 CCTTCCTATCCTTTT-CAATCTCTCC-AGCTTTATTGTCCTCCCTTGAGCCT-ATTGTTT 563
|| || | |||||| || ||||| | | ||||| | || ||| | |||| | ||||
Sbjct 523 CCAACCCA-CCTTTTTCATTCTCTTCGA-CTTTACTATCATCCA--GCGCCTGA--GTTT 576
Query 564 TGCAACTGTTGTGAAACA-AATTTCCTTCAA-ATGT-CTTATCAATGTCCTACCTACAAC 620
|||| |||||| ||||| || | | |||| || | || |||| |||| ||||| |||
Sbjct 577 TGCATTTGTTGTAAAACAGAAGT-C-TTCATGATTTTCT-ATCATTGTCTTACCTGCAAT 633
Query 621 TTAACTATGCATCCGGTTTGT-CAA 644
|| | ||||||||| || ||| |||
Sbjct 634 TTGAGTATGCATCCAGTCTGTGCAA 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32401024815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5