BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939617

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02420.1 | Symbols:  | unknown protein; Has 90 Blast hits to...   643    0.0  


> AT5G02420.1 | Symbols:  | unknown protein; Has 90 Blast hits 
to 90 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:523389-524076 FORWARD LENGTH=688
Length=688

 Score =  643 bits (348),  Expect = 0.0
 Identities = 378/392 (96%), Gaps = 3/392 (1%)
 Strand=Plus/Plus

Query  1    TCTCTCTCTAAAACTTGTCTAATGGCAGAGATCTGCTGCGTCAAAGAGATCCAAGAAGAA  60
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  92   TCTCTCTGTAAAACTTGTCTAATGGCAGAGATCTGCTGCGTCAAAGAGATCCAAGAAGAA  151

Query  61   GACGTAGAGAAGATCCGATTACCGACCCGACCCGAATTAGACATCCCTGACCCTGATCAC  120
            ||||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  152  GACGTGGAGAAGATCCGATTACCGACCCGACCCGAATTAGACATTCCTGACTCTGATCAC  211

Query  121  GAAGATCCAACGGTCAACGAAGAAGATGGGTGCAAGACTCCAACATCGTCCGATCACAAG  180
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  212  GAAGATCCAACGGTCAACGAAGAAGAAGGGTGCAAGACTCCAACATCGTCCGATCACAAG  271

Query  181  ATTCCGGAGGTGAAGTATACGTTATGTCCACCGGCTCCGAGAAAACCGAAACCGAACCGG  240
            ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || 
Sbjct  272  ATTCCGGAGGTGAAGTATACGTTATGTCCACCGGCTCCGAGAAAACCAAAACCGAATCGA  331

Query  241  TCTTCCGGTACGAAACGGAAATTAACGCCGGTTAATGTTGTTAACCGTATACCGATTGAT  300
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  332  TCTTCCGGTACGAAACGGAAATTAACGCCGGTTAATGTTGTTAACCGCATACCGATTGAT  391

Query  301  CTGAGCCGTGAGATCGAGATGTTCTTCGAGGATTTGGACCGTAGGATCAAGAAGTCCCGG  360
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  392  CTGAGCCGTGAGATCGAGATGTTCTTCGAGGATTTGGACCGTAGGATCAAGAAGTCACGG  451

Query  361  AAACAATAAGA---TTATTGCTTTAATTGGTA  389
            |||||||||||   ||||||| ||||||||||
Sbjct  452  AAACAATAAGAAGATTATTGCCTTAATTGGTA  483



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18347728385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5