BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939618
Length=1139
Score E
Sequences producing significant alignments: (Bits) Value
AT5G05030.1 | Symbols: | Protein of Unknown Function (DUF239) ... 438 5e-122
> AT5G05030.1 | Symbols: | Protein of Unknown Function (DUF239)
| chr5:1484177-1486065 REVERSE LENGTH=1213
Length=1213
Score = 438 bits (237), Expect = 5e-122
Identities = 649/839 (77%), Gaps = 64/839 (8%)
Strand=Plus/Plus
Query 113 AAGTTAAATGAGAAGATGATATATGATTGTGTGGATATTTACAAACAACCTTCGCTAAAT 172
|||||||||||||| | |||||||||||||||||||| || |||||||| ||| ||| |
Sbjct 146 AAGTTAAATGAGAACACCATATATGATTGTGTGGATATATATAAACAACCGTCGTTAAGT 205
Query 173 CATCCACTAC-TCAAAAATCACAAAATTCAGATGGAACCATCTTTTCTAATCCCTAAATC 231
|||||||||| || ||||||| ||| ||||| |||||||||| |||| | || ||| |
Sbjct 206 CATCCACTACTTC-AAAATCATAAAGTTCAGCTGGAACCATC-TTTC---T-CC-AAACC 258
Query 232 AAAAAATCAAGTCGAACG-CAAAAT-ATTCAAAACA-ATCATCGATTGTCCAAACGGAAC 288
|||||||||||| || | ||| | | |||| | |||||||| ||||| || |||||
Sbjct 259 AAAAAATCAAGTTAAAGGTGAAAGTGAAAGAAAAAATATCATCGAGTGTCCTAATGGAAC 318
Query 289 AGTTCCTATATTGAGACACACAAAAGAGTATGTTGCAAATGCCCAATATTTTGG--AGAA 346
|||||| ||| | ||| | |||||| | |||||||||||||| ||||| |||| ||||
Sbjct 319 AGTTCCGATAATAAGAAATACAAAAAAATATGTTGCAAATGCTCAATA--TTGGACAGAA 376
Query 347 AAGCATTTCAATCCG-TTCACAATGC-AAAGTCATGGAATACATTTTGCCGGAGTTAGAT 404
|| || || |||||| || ||||| | | |||||||| | |||| |||| |||||| |
Sbjct 377 AAACACTTAAATCCGCTT-ACAAT-CGATAGTCATGGGACACATATTGCTGGAGTT--A- 431
Query 405 TGAAAGGCAAC-GGTC-AGAGTCCTTTCTAT-G-GT-ACAGCATCTTATATAAGTGTACA 459
| || |||| | || || |||||| | | | || | ||| || | | ||||| ||
Sbjct 432 -G-AA--CAACAGATCAAG-GTCCTTACCGTGGTGTGATAGCTTC-GCT-T-AGTGTGCA 483
Query 460 TGACTTAAACGTTAGTCGGGACCAAGTTTCATATGCTCACGTATATGCTGGCAGTCGAGT 519
|||||| || ||||| | || |||| |||||||||| | ||||| ||||||| || |
Sbjct 484 TGACTTGAATATTAGTAGAGATCAAGCTTCATATGCTAATATATATATTGGCAGTGGAAT 543
Query 520 AAACAACATAGATAATTTTATTGAAACCGGTTGGATGATAAATCCAAGTTTATTTGGTGA 579
|| ||| || ||||||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 544 CTACGACAAAGTTAATTTTATCCAAACCGGCTGGATGATAAATCCAAGTTTATTTGGTGA 603
Query 580 TGGACGCGTATGGGGTTATGGATATTTT-AAGGGTGCCAATGG-GACAGGGTGTTATAAT 637
||||| |||| ||||||| | ||| ||||| || || || | |||| |||||||||
Sbjct 604 CGGACGTACATGGAGTTATGGGT-TTTGGAAGGGAGCTAACGGAG-CAGGTTGTTATAAT 661
Query 638 ACAGTATGTCCTGGTTTTGTTCAAGTGTCAAAAAGAGATC-TTATAAGTGGGCCTTTACC 696
||| |||||| ||||||||||||||| ||||||| ||||| || ||||||| ||||||||
Sbjct 662 ACAATATGTCGTGGTTTTGTTCAAGTATCAAAAACAGATCATT-TAAGTGGACCTTTACC 720
Query 697 TGAAGCTCC--TGA--AGGTAAAAGAAACATTG--GTT-CTAATTTTCAACAGGATaaaa 749
| || |||| | | ||| | ||| | ||| ||| ||| || | |||||| |||
Sbjct 721 TCAA-CTCCCCTCAGGAGGGGACAGAGATATTTCTGTTTCTA-TT--CGACAGGACAAAG 776
Query 750 aaaCAGGAAATTGGTGGG-TATCAGATATAAAA---AACGTAGGAAAAGATATACACATT 805
| ||||||||||||||| || ||||||||| | || | | | |||| ||| | |
Sbjct 777 AGACAGGAAATTGGTGGACTA-CAGATATAAGAGGCAATGAATCAGAAGA-ATATATA-- 832
Query 806 GGTTATTGGCCAAAGGAACTATTTGATGTGATAAGTGATG-GTGTGAATATTGTTGGAGT 864
|| ||||||||||| |||||||||||| | || ||| | | ||| || || ||||||||
Sbjct 833 GGCTATTGGCCAAAAGAACTATTTGATCTTATTAGTAA-GAGTGCAAACATAGTTGGAGT 891
Query 865 TGGAGGAGTAGTCAAGACTTCTCCTTCCGG-CAATAGTCCACCAATGGGTAATGGTCAT 922
| |||| |||| || |||||||||| || ||| || |||||||||||||||||||||
Sbjct 892 TACAGGAACAGTCCAGGCTTCTCCTTCGGGTCAA-AGCCCACCAATGGGTAATGGTCAT 949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55873206585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5