BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939626
Length=1556
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02480.1 | Symbols: | HSP20-like chaperones superfamily pro... 2420 0.0
> AT5G02480.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr5:547563-549912 FORWARD LENGTH=2350
Length=2350
Score = 2420 bits (1310), Expect = 0.0
Identities = 1471/1548 (95%), Gaps = 14/1548 (1%)
Strand=Plus/Plus
Query 22 ATGAAAGGTTCAATTCTTACTGTTTTGTCAATGGAGAATCATCATCCTTCAACGCTTTTA 81
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 590 ATGAAAGGTTCAATTCTTACTGTTTTGTCAATGGAGAATCATCATCCGTCAACGCTTTTA 649
Query 82 TCAATGGACTCTAGTGGTTCATCTCATGAAGAGCTTGATTTGGAGATGAACAATGGTAAT 141
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 TCTATGGATTCTAGTGGCTCATCTCATGAAGAGCTTGATTTGGAGATGAACAATGGTAAT 709
Query 142 CGGCAAATCACACTTTACAATCCACCAGACATCAATCTGCCTTTGTCTGTTGGACGAAGC 201
|||||||||| ||||| |||||||||||||| ||||||||||||||||| ||| |||||
Sbjct 710 AGGCAAATCACTCTTTATAATCCACCAGACATTAATCTGCCTTTGTCTGTAGGAAGAAGC 769
Query 202 TCTCCTTCATGGAATTTGGATTCTTGTGATAACATTTTGGATGTTGGTCTTAGCTCTCAT 261
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TCTCCTTCTTGGAATTTGGATTCTTGTGATAACATTTTGGATGTTGGTCTTAGCTCTCAT 829
Query 262 GTTTACGAGACCGAGACGTTTCTCAATGTGGTTCCGAGTAAAGTCGCTAAGAAATGCTTG 321
|| || |||||||||||||||||||||||||| ||||||||||| |||||||| || |||
Sbjct 830 GTCTATGAGACCGAGACGTTTCTCAATGTGGTCCCGAGTAAAGTAGCTAAGAAGTGTTTG 889
Query 322 AAACGAGGGGATAGTATGTGGGGAGCTTGGTTTTTCTTTAGCTTCTACTTCAAACCGGCG 381
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 890 AAACGAGGGGATAGTATGTGGGGAGCTTGGTTTTTCTTTAGCTTCTACTTCAGACCGGCG 949
Query 382 TTGAATGAGAAATCGAAGTCTAAGGTCATTAGGGAAA------CTAGT--A--ATGGAGG 431
|||||||||||||| |||||||||||||||||||||| | || | | |||||
Sbjct 950 TTGAATGAGAAATCCAAGTCTAAGGTCATTAGGGAAAGTGGTGGTGGTGGAGGA-GGAGG 1008
Query 432 AGGAGGATGTTTTACTGGGTTTGATAAATCTGATCTCAAGCTCGATGTTTTTCTTGTTCA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1009 AGGAGGATGTTTTACTGGGTTTGATAAATCTGATCTCAAGCTCGATGTTTTTCTTGTTCA 1068
Query 492 GCATGATATGGAGAACATGTATATGTGGGCTTTTAAGGATAAACCCGAGAATGCGCTCGG 551
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1069 GCATGATATGGAGAACATGTATATGTGGGCTTTTAAGGATAAACCTGAGAATGCGCTTGG 1128
Query 552 TAAAATGCAGTTGAGAAGTTACATGAATGGGCATTCTCGTCAAGGTGAGCGCCCCTTTCC 611
||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 1129 GAAAATGCAGTTGAGAAGCTATATGAATGGGCATTCTCGTCAAGGTGAGCGTCCGTTTCC 1188
Query 612 GTTTAGTGCGGAGAAAGGGTTTGTTCGGTCTCACAGAATGCAGAGGAAGCATTACAGAGG 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1189 GTTTAGTGCGGAGAAAGGGTTTGTTCGGTCTCACAGAATGCAGAGGAAGCATTACAGGGG 1248
Query 672 ACTCTCTAATCCTCAGTGTCTTCACGGGATTGAGTTTGTGGCTTCGCCGAGTTTGTTTGG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1249 ACTCTCTAATCCTCAGTGTCTTCACGGGATTGAGTTTGTGGCTTCGCCGAGTTTGTTTGG 1308
Query 732 TGTCAGTGAAGAAGATAAGAAGAGATGGATGGAGCTGACGGGTCGAGATTTGAAGTTCAC 791
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1309 TGTCGGTGAAGAAGATAAGAAGAGATGGATGGAGCTCACGGGTCGAGATTTGAAGTTCAC 1368
Query 792 TATCCCTCCTGATGCTAGTGATTTCGGTTCATGGAGAAATCTTCCCAACACAGATATCGA 851
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1369 TATCCCTCCTGATGCTAGTGATTTCGGTTCATGGAGAAATCTTCCCAACACAGACATCGA 1428
Query 852 GCTAGAGAGACCAGCTCATGTTACAAAACCGGCACCGAATAACGCCAAGAAGATTCTCAG 911
|||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct 1429 GCTAGAGAGACCAGCTCATGTTACTAAAGCAGCACCGAATAACGCCAAGAAGATTCTCAA 1488
Query 912 CGGCTCGGGTTTACATTTGACTAGCAACGCGTCTTTCAGTAGCAATGGGGACTCGTCGGA 971
||||| || ||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1489 TGGCTCCGGCTTACATTTGACAAGCAATGCGTCTTTCAGTAGCAATGGGGACTCGTCTGA 1548
Query 972 TCAATCTCCAGGAGGAG---TCATCAACAACAAGAAGAGAAAAGAGTTTCTATCTCCGGG 1028
||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 1549 TCAATCTCCAGGAGGAGGAGTCATCAACAACAAGAAGAGAAAAGAGTTTCTATCTCCTGG 1608
Query 1029 AAGCAGCGAAGAAGAATGTTGTTTAACTGTTAACAACATCGAGACCCACCACTCCAAGGA 1088
|||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||
Sbjct 1609 AAGCAGCGAAGAAGAATGCTGTTTGACTGTTAACAACATCGAGACCCACCACGCCAAGGA 1668
Query 1089 CCCGCCCAGTTGGGTAAACGACTTCACTGGAGTTATGAAGAATAGCTGCGGACCCGTAAC 1148
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1669 CCCGCCCAGTTGGGTAAACGACTTCACGGGAGTGATGAAGAATAGCTGCGGACCTGTAAC 1728
Query 1149 TGCAGCAAAAACCGTCTACGAGGACGAAGAAGCTTATCTAGTCGTAATTACTCTACCATT 1208
||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1729 TGCTGCAAAAACCGTCTATGAGGACGAAGAAGCTTATCTGGTCGTAATAACTCTACCATT 1788
Query 1209 TGTTGATTTGAACACCGTGAAGGTTTCATGGAGGAACAATATCACAAATGGAATCGTGAA 1268
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 TGTGGATTTGAACACCGTGAAGGTTTCATGGAGGAACAATATCACAAATGGAATCGTGAA 1848
Query 1269 GGTCACGGGACTGAGCACTTCAAGGGCTTCGTTTGTGAAGAGACGGGACCGGACTTTCAA 1328
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1849 GGTCACGGGACTAAGCACTTCGAGGGCTTCGTTTGTGAAGAGACGGGACCGGACTTTCAA 1908
Query 1329 GCTGGTTGATCAGACGGCTGAGCATTGTCCTCCAGGGGAATTCATGAGGGAGATACAGTT 1388
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1909 GCTGGTTGATCAGATGGCTGAGCATTGTCCTCCAGGGGAATTCATGAGGGAGATACAATT 1968
Query 1389 GCCAAATCGGATTCCGGAAGAAGCAAACATCGAAGCATATTTTGATGGGACTGGACCAGT 1448
||| ||||||||||||||||||||||| || |||||||| ||||||||||||||||||||
Sbjct 1969 GCCGAATCGGATTCCGGAAGAAGCAAATATTGAAGCATACTTTGATGGGACTGGACCAGT 2028
Query 1449 TTTAGAGATTGTGGTTCCAAAATTGAGAGGAGGAGTGGAGGAAGAACACGAGGTTAGAGT 1508
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2029 TTTAGAGATTGTGGTTCCAAAATTGAGAGGAGGAGTGGAGGAAGAACACGAGGTTAGAGT 2088
Query 1509 TTGTCTACGGTCACACCACCTCGGATAAAAGATGCAACCATGTTTTAA 1556
|||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2089 TTGTCTACGGTCACACCACCTCGGATGAAAGATGCAACCATGTTTTAA 2136
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76806833850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5