BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939629

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G02502.1 | Symbols:  | Oligosaccaryltransferase | chr5:55828...   217    4e-56


> AT5G02502.1 | Symbols:  | Oligosaccaryltransferase | chr5:558285-559235 
REVERSE LENGTH=521
Length=521

 Score =  217 bits (117),  Expect = 4e-56
 Identities = 125/129 (97%), Gaps = 0/129 (0%)
 Strand=Plus/Plus

Query  99   ATGTTTGACGACCAAGACCTCGGCTTCTTTGCCAATTTTCTGGGGATTTTCATCTTCATA  158
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  95   ATGTTTGACGACCAAGACCTCGGCTTCTTTGCCAATTTTCTGGGGATTTTCATCTTCATA  154

Query  159  ATGGTCATTGCATACCATTTCGTGGGGGCAGAGCCAAAATTCGAATGAAAATGAGGTTTT  218
            ||||||||||||||||||||||||| ||||||||| |||||||||||| |||||||||| 
Sbjct  155  ATGGTCATTGCATACCATTTCGTGGTGGCAGAGCCTAAATTCGAATGAGAATGAGGTTTC  214

Query  219  ATCTTTGTT  227
            |||||||||
Sbjct  215  ATCTTTGTT  223



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5