BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939631

Length=232
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04070.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfam...   113    6e-25


> AT5G04070.1 | Symbols:  | NAD(P)-binding Rossmann-fold superfamily 
protein | chr5:1102090-1104446 FORWARD LENGTH=1482
Length=1482

 Score =  113 bits (61),  Expect = 6e-25
 Identities = 109/129 (84%), Gaps = 15/129 (12%)
 Strand=Plus/Plus

Query  14   AATTATGATGGAGAATCTGAAGGATGCTTTACGTTTTATCTGCTCATGTTATTTCTGGAG  73
            |||| ||||||||||| ||||||| ||||| |||||||||||||||| | ||||||||||
Sbjct  143  AATT-TGATGGAGAATTTGAAGGAGGCTTTGCGTTTTATCTGCTCATCTAATTTCTGGAG  201

Query  74   GATGGCTT-TGTTTTGGAACATTG----CC------C-T-CTTTCAATTGCTTAAAAAGA  120
            ||||| || |||||||||||||||    ||      | | ||||||||||||||||||||
Sbjct  202  GATGG-TTCTGTTTTGGAACATTGCCCTCCTTTTTTCGTACTTTCAATTGCTTAAAAAGA  260

Query  121  GTATCTTTG  129
            |||||||||
Sbjct  261  GTATCTTTG  269



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10455691792


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5