BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939636
Length=439
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:57... 665 0.0
AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:29... 379 1e-104
AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19... 302 2e-81
AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein | ch... 243 1e-63
> AT5G02570.1 | Symbols: | Histone superfamily protein | chr5:576742-577140
REVERSE LENGTH=399
Length=399
Score = 665 bits (360), Expect = 0.0
Identities = 386/399 (97%), Gaps = 0/399 (0%)
Strand=Plus/Plus
Query 21 ATGGCACCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAaaggcggagaag 80
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGCCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAAAGGCGGAGAAG 60
Query 81 aagatcgcgaaagaaggaggaacgagcgagattattaagaagaagaagaagacgaagaag 140
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 61 AAGATCGCGAAAGAAGGAGGAACGAGCGAGATTGTCAAGAAGAAGAAGAAGACGAAGAAG 120
Query 141 agCACGGAGACGTACAAGATCTACATCTTCAAGGTATTGAAACAGGTTCATCCAGATATC 200
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 121 AGCACAGAGACGTACAAGATCTACATTTTCAAGGTATTGAAACAGGTTCATCCAGATATT 180
Query 201 GGAATCTCTGGTAAAGCAATGGGAATCATGAACAGTTTCATCAACGACATTTTTGAGAAA 260
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GGAATCTCTGGTAAAGCGATGGGAATCATGAACAGTTTCATCAACGACATTTTCGAGAAA 240
Query 261 CTCGCTCAGGAATCGTCTCGTCTCGCTCGTTACAATAAGAAACCGACCATCACGTCTCGT 320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 CTCGCTCAGGAATCGTCTCGTCTCGCTCGTTACAATAAGAAACCGACGATCACGTCTCGT 300
Query 321 GAAATCCAAACCGCTGTGAGACTTGTTTTGCCTGGTGAATTGGCTAAGCATGCTGTCTCT 380
|||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 301 GAAATCCAAACCGCCGTGAGACTTGTTCTGCCTGGTGAATTGGCTAAGCATGCCGTCTCT 360
Query 381 GAAGGAACCAAAGCCGTCACCAAATTCACAAGCTCTTAA 419
|||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GAAGGAACCAAAGCTGTCACCAAATTCACAAGCTCTTAA 399
> AT3G09480.1 | Symbols: | Histone superfamily protein | chr3:2914714-2915321
REVERSE LENGTH=608
Length=608
Score = 379 bits (205), Expect = 1e-104
Identities = 344/408 (84%), Gaps = 22/408 (5%)
Strand=Plus/Plus
Query 20 AATGGCACCGAAGGCAGAGAAGAAACCGGCGGAGAAAGCACCAGCACCAaaggcggagaa 79
|||||||||||||||||||||||||||| ||||| | | |||||||||||| || ||
Sbjct 51 AATGGCACCGAAGGCAGAGAAGAAACCGTCGGAG--A--A--AGCACCAAAGGCAGATAA 104
Query 80 gaagatcgcgaaagaaggaggaacgagcgagattattaagaagaagaagaagacgaagaa 139
||||||| ||||||||||||| | |||||| || |||||||||||| |||||
Sbjct 105 GAAGATCACGAAAGAAGGAGG-A--AGCGAG-------AG--GAAGAAGAAGACTAAGAA 152
Query 140 gagCACGGAGACGTACAAGATCTACATCTTCAAGGTATTGAAACAGGTTCATCCAGATAT 199
|||||| |||||||||||||||||| | |||||||| |||||||| |||||||| |||||
Sbjct 153 GAGCACAGAGACGTACAAGATCTACCTATTCAAGGTGTTGAAACAAGTTCATCCTGATAT 212
Query 200 CGGAATCTCTGGTAAAGCAATGGGAATCATGAACAGTTTCATCAACGACATTTTTGAGAA 259
||| |||||||| ||||| ||||||||||||||||||||||||||||||| || |||||
Sbjct 213 CGGGATCTCTGGAAAAGCCATGGGAATCATGAACAGTTTCATCAACGACACCTTCGAGAA 272
Query 260 ACTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGAAACCGACCATCACGTCTC 318
| | |||| ||||||||| || | | ||| | || || ||||||||||| |||||||| |
Sbjct 273 AATTGCTCTGGAATCGTCGCGAT-TGGCTAGGTATAACAAGAAACCGACGATCACGTCCC 331
Query 319 GTGAAATCCAAACCGCTGTGAGACTTGTTTTGCCTGGTGAATTGGCTAAGCATGCTGTCT 378
| |||||||||||||| || || || || |||||||||||||| || ||||| ||||| |
Sbjct 332 GGGAAATCCAAACCGCCGTAAGGCTCGTGTTGCCTGGTGAATTAGCGAAGCACGCTGTTT 391
Query 379 CTGAAGGAACCAAAGCCGTCACCAAATTCACAAGCTCTTAAAGATTAG 426
|||| || ||||||||||||||||||||||| || ||||| ||||||
Sbjct 392 CTGAGGGTACCAAAGCCGTCACCAAATTCACCAGTTCTTA--GATTAG 437
> AT3G53650.1 | Symbols: | Histone superfamily protein | chr3:19889358-19889774
FORWARD LENGTH=417
Length=417
Score = 302 bits (163), Expect = 2e-81
Identities = 294/355 (83%), Gaps = 17/355 (5%)
Strand=Plus/Plus
Query 65 ACCAaaggcggagaagaagatcgcgaaagaaggaggaacgagcgagattattaagaagaa 124
|||||||||||||||||||||| | || ||||| || | ||| || | ||||||||
Sbjct 72 ACCAAAGGCGGAGAAGAAGATCACCAAGGAAGGTGG-A--AGC--GA--A--AAGAAGAA 122
Query 125 gaagaaga-cgaagaagagCA-CGGAGACGTACAAGATCTACATCTTCAAGGTAT-TGAA 181
|||||| | ||||||||| || | ||||||||||||||||||||||||||||| | ||||
Sbjct 123 GAAGAA-ATCGAAGAAGAACATC-GAGACGTACAAGATCTACATCTTCAAGGT-TCTGAA 179
Query 182 ACAGGTTCATCCAGATATCGGAATCTCTGGTAAAGCAATGGGAATCATGAACAGTTTCAT 241
||| |||||||| |||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 180 ACAAGTTCATCCTGATATCGGAATCTCCGGGAAAGCGATGGGGATCATGAACAGTTTCAT 239
Query 242 CAACGACATTTTTGAGAAACTCGCTCAGGAATCGTCTCG-TCTCGCTCGTTACAATAAGA 300
||||||||| || |||||||| ||||||||||| || || | | ||| | ||||| ||||
Sbjct 240 CAACGACATCTTCGAGAAACTAGCTCAGGAATCATCGCGAT-TGGCTAGGTACAACAAGA 298
Query 301 AACCGACCATCACGTCTCGTGAAATCCAAACCGCTGTGAGACTTGTTTTGCCTGGTGAAT 360
||||||| ||||| ||||| ||||| || || || ||||||||||| |||||||| ||
Sbjct 299 AACCGACGATCACTTCTCGGGAAATTCAGACGGCGGTGAGACTTGTGTTGCCTGGAGAGC 358
Query 361 TGGCTAAGCATGCTGTCTCTGAAGGAACCAAAGCCGTCACCAAATTCACAAGCTC 415
| | || || ||||| |||||||| || || || || || |||||||| |||||
Sbjct 359 TCTCGAAACACGCTGTTTCTGAAGGCACTAAGGCGGTTACTAAATTCACTAGCTC 413
> AT3G46030.1 | Symbols: HTB11 | Histone superfamily protein |
chr3:16913448-16914131 REVERSE LENGTH=684
Length=684
Score = 243 bits (131), Expect = 1e-63
Identities = 250/307 (81%), Gaps = 10/307 (3%)
Strand=Plus/Plus
Query 116 taagaagaagaagaagacgaagaagagCACGGAGACGTACAAGATCTACATCTTCAAGGT 175
|||||||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 215 TAAGAAGAAGAAGATGAAGAAGAAGAGTGTTGAGACGTACAAGATCTACATCTTCAAGGT 274
Query 176 AT-TGAAACAGGTTCATCCAGATATCGGAATCTCTGGTAAAGCAATGGGAATCATGAACA 234
| ||||||| |||||||||||||| || || || | ||||| ||||| || |||||||
Sbjct 275 -TCTGAAACAAGTTCATCCAGATATTGGTATTTCAAGCAAAGCTATGGGGATTATGAACA 333
Query 235 GTTTCATCAACGACATTTTTGAGAAACTCGC-TCAGGAATCGTCTC-GTCTCGCTCGTTA 292
|||||||||||||||| ||||||||| | || || ||||||||| | ||||| | ||
Sbjct 334 GTTTCATCAACGACATCTTTGAGAAATTGGCATC-GGAATCGTCGAAG-CTCGCGAGGTA 391
Query 293 CAATAAGAAACCGACCATCACGTCTCGTGAAATCCAAACCGCTGTGAGACTTGTT-TTGC 351
|||||||| ||||| || || ||||| || || || || ||||| ||||||||| || |
Sbjct 392 TAATAAGAAGCCGACGATTACTTCTCGGGAGATTCAGACTGCTGTTAGACTTGTTCTT-C 450
Query 352 CTGGTGAA-TTGGCTAAGCATGCTGTCTCTGAAGGAACCAAAGCCGTCACCAAATTCACA 410
||||||| ||| | || |||||||| ||||||||||| || || || || || || ||
Sbjct 451 CTGGTGAGCTTG-CGAAACATGCTGTTTCTGAAGGAACTAAGGCGGTGACTAAGTTTACT 509
Query 411 AGCTCTT 417
|||||||
Sbjct 510 AGCTCTT 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20861115835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5