BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939639
Length=340
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02600.2 | Symbols: NAKR1 | Heavy metal transport/detoxifica... 311 3e-84
> AT5G02600.2 | Symbols: NAKR1 | Heavy metal transport/detoxification
superfamily protein | chr5:584162-586906 REVERSE LENGTH=1335
Length=1335
Score = 311 bits (168), Expect = 3e-84
Identities = 202/219 (92%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 110 TGAGACAAACAGTTTGCTCTGGTCTAGACCATCGGCTAGAGGACTGGATGATTCACCACC 169
|||||| | | ||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1009 TGAGACCAGCCGTTTGCTCTGGTCTAGACCATGGGCTAGAGGACTGGCTGATTCACCACC 1068
Query 170 ACAAGGTCCACATAAACCAACCATGTTCGGCTTAAAACCATGGTCACCATCACAACGCGT 229
||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1069 ACAAGATCCACATAAACCAACCATCTTCGGCTTAAAACCATGGTCACCATCACAACGCCT 1128
Query 230 GGTTTTCAGAATGTTACCAAAAAACGTTCCGATCCCGCCATCCGGACCGAGCCGTAAAGA 289
| |||||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||
Sbjct 1129 GATTTTCAGAATGTTACCAAAAAACGTTCCAATCCCGCCATCGGGACCAAGCCGAAAAGA 1188
Query 290 AACTCCTCCATCGCCTCCTAGATCCGTGTGATAATCGTT 328
|||||||||||| || ||||||||||| ||||| |||||
Sbjct 1189 AACTCCTCCATCTCCGCCTAGATCCGTATGATACTCGTT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15884608684
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5