BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939640
Length=1000
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02600.2 | Symbols: NAKR1 | Heavy metal transport/detoxifica... 1533 0.0
> AT5G02600.2 | Symbols: NAKR1 | Heavy metal transport/detoxification
superfamily protein | chr5:584162-586906 REVERSE LENGTH=1335
Length=1335
Score = 1533 bits (830), Expect = 0.0
Identities = 921/966 (95%), Gaps = 2/966 (0%)
Strand=Plus/Plus
Query 12 ATACAAAACATGTTGTGTGCTTCTCAAGCATCAACAACGACCCTTTGCTCAACCATGGAC 71
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 43 ATACAAAACATGTTGTGTGCTTCTCAAGCATCAACAACAACCCTTTGCTCAACCATGGAT 102
Query 72 CAAACCTCACAACCTTCATCTTCCTCTTCATCCGCAATCCGGCTTGGTGGTCGAGCCATC 131
||||||||||||||||| ||||| |||||| || | |||||||| ||||||||||||||
Sbjct 103 CAAACCTCACAACCTTCTTCTTCTTCTTCAGCCACGATCCGGCTCGGTGGTCGAGCCATT 162
Query 132 GATCGTCATAACCCAATCATACGTGACGGTCGGAGACTGACTCCTCCACCTTCTCCAAGC 191
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 163 GACCGTCATAACCCAATCATACGTGACGGTCGGAGACTCACTCCTCCACCTTCCCCAAAC 222
Query 192 CTTAATCCATCTTCTTCGTCTTCTTCTACTTATCATACTCCTCTTATGACTAGATTAGGT 251
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 223 CTTAATCCCTCTTCTTCGTCTTCTTCTACTTATCATACTCCTCTTATGACTAGACTAGGT 282
Query 252 CTTGAGAGTAGTGAGCAAAAAC-GTGTAGCGAAGAGGAAGAGCAAGAAAGGTGACAGTGA 310
|| ||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 283 CTCGAGAGTAGTGAACAAAAACGGT-TAGCGAAGAGGAAGAGCAAGAAAGGTGACAGTGA 341
Query 311 CGTTGGTAAGTCACCGGTTAGTTGTTTTAGCAGTGACACTCCTCAGGGTTCTTCAAGGTA 370
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 342 TGTTGGTAAGTCACCGGTTAGTTGTTTTAGCAGTGACACACCTCAGGGTTCTTCAAGGTA 401
Query 371 CTTATTGAGTAACCCGGTTTTCTTTGACGGGTTTGTGGATTCCGAACCGATTCCACTACC 430
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 402 CTTATTGAGTAACCCGGTTTTCTTTGACGGGTTTGTGGATTCCGACCCGATTCCAATACC 461
Query 431 TATTGATGAACCGGAGATAACCAAAGCTGATGATTTGGATAATCTTCATGAAGAGCAACT 490
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| | |||
Sbjct 462 TATTGATGAACCGGAGATAACCAAAGCTGATGATTTAAATAATTTTCATGAAGATCGACT 521
Query 491 GATTATAAACGCCTCAAAGTATCTATCAACTTCTGCGTCTTTCTTGGAGAAGAAGCAACC 550
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 522 CATAATAAACGCCTCAAAGTATCTATCAACTTCTGCTTCTTTCTTGGAGAAGAAGCAACC 581
Query 551 CGATTTCTTTGAGGGGTTCTTGGATTATGAACCGGTTCTGTCTCCGGATAATCCTTTCTC 610
||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 582 CGATTTCTTCGAGGGGTTCTTGGATTATGAACCGGTTCTATCTCCCGATAATCCTTTCTC 641
Query 611 TGAACCCACAAAAGCTTCTCCTACAGCATCTCTGAGCTCTCTTGAAGATAAAGATGTTAC 670
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 642 TGAACCCACAAAAGCTTCTCCTACAGCTTCTCTGAGCTCTCTTGAAGATAAAGATGTTTC 701
Query 671 GTCCCCGGATTTCAAATTctctcctcctcctccaccacctccttctcctcctccGTCTTC 730
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||
Sbjct 702 GTCCCCGGATTTCAAATTCTCTCCTCCTCCTCCCCCACCTCCTTCTCCTCCTCAGTCGTC 761
Query 731 GCCGCCACCACCACCAGTGAAAAACTCGTCTTCCGATCAAGTGGTTGTTTTGAGAGTGTC 790
||||||| ||||||| | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 762 GCCGCCATCACCACCGGAGAAAAACTCATCTTCCGATCAAGTGGTTGTTTTGAGAGTGTC 821
Query 791 ACTTCATTGCAAAGGCTGTGCAGGGAAAGTTAAGAAACATCTATCGAAATTGAAAGGAGT 850
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 822 ACTTCATTGCAAAGGCTGTGCAGGGAAAGTTAAGAAACATCTATCGAAATTGAAAGGAGT 881
Query 851 GACGTCGTATAACATAGACTTCGCAGCAAAGAAGGTTACCGTGACGGGAGACGTGACGCC 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 882 GACGTCGTATAACATAGACTTCGCAGCAAAGAAGGTTACCGTGACGGGAGACGTGACACC 941
Query 911 GTTAACTGTGTTGGCGAGTATTTCCAAAGTTAAAAACGCACAGTTTTGGCCTGAGATTAT 970
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 942 GTTAACTGTGTTGGCGAGTATTTCCAAAGTTAAAAACGCTCAGTTTTGGCCTGAGATTAT 1001
Query 971 TCAGAA 976
||||||
Sbjct 1002 TCAGAA 1007
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48978293325
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5