BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939651
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein... 1877 0.0
> AT5G02760.1 | Symbols: | Protein phosphatase 2C family protein
| chr5:625254-627124 FORWARD LENGTH=1543
Length=1543
Score = 1877 bits (1016), Expect = 0.0
Identities = 1111/1157 (96%), Gaps = 5/1157 (0%)
Strand=Plus/Plus
Query 1 GAATATTACATACCTGAG-AAGATGGTTAAACCCTGTTGGAGAATAGGTGCCGGTATGGA 59
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GAAGATTACATACCTGAGAAAGATGGTTAAACCCTGTTGGAGAATAGGTGCCGGTATGGA 161
Query 60 GAGAAGCAAGATCAATCCCACAAAGGTTGATGGCTTGACATGGTATAAAGATCTCGGCCT 119
|||||| |||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 162 GAGAAGTAAGATCAATCCCACAAAGGTTGATGGTTTGACATGGTACAAAGATCTTGGTCT 221
Query 120 TCACGCCTTCGGAGAGTTTTCCATGGCAATGATCCAAGCCAACAGTGTGATGGAGGATCA 179
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TCACACCTTTGGAGAGTTTTCCATGGCAATGATCCAAGCCAACAGTGTGATGGAGGATCA 281
Query 180 GTGCCAGATCGAATCAGGGCCACTTACATTCAACAATCCGACAGTTCAAGGCACGTTTGT 239
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 282 GTGCCAGATCGAATCAGGGCCGCTTACATTCAACAATCCGACAGTTCAAGGCACATTTGT 341
Query 240 TGGAGTTTACGATGGCCATGGAGGTCCAGAGGCTTCCAGATTCATTGCAGACAACATCTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 342 TGGAGTTTACGATGGCCATGGAGGTCCAGAGGCTTCCAGATTCATTGCAGACAACATCTT 401
Query 300 CCCCAAGTTAAAGAAGTTTGCCTCTGAGGGTAGGGAGATTTCAGAGCAGGTGATCAGCAA 359
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 402 CCCCAAGTTAAAGAAGTTTGCGTCCGAGGGTAGGGAGATTTCAGAGCAGGTGATCAGCAA 461
Query 360 AGCATTTGCAGAGACAGACAAAGATTTTCTCAACG-CAGTGAAGAAGCAATGGCCTACGA 418
||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||
Sbjct 462 AGCATTTGCCGAGACAGACAAAGATTTTCTCAA-GACAGTGACGAAGCAATGGCCTACGA 520
Query 419 ACCCACAGATGGCATCAGTTGGGTCCTGTTGCTTGGCAGGAGTGATATGCAACGGATTGG 478
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 521 ACCCACAGATGGCATCAGTGGGGTCATGTTGCTTGGCAGGAGTGATATGCAACGGATTGG 580
Query 479 TGTATATTGCAAACGCGGGAGATTCCAGAGCTGTGTTGGGCAGATCTGAGAGAGGTGGAG 538
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TGTATATTGCAAACACGGGAGATTCCAGAGCTGTGTTGGGCAGATCTGAGAGAGGTGGAG 640
Query 539 TGAGAGCTGTTCAGTTATCTGTAGAGCACAATGCCAATCTAGAGTCTGCGAGGCAAGAGC 598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 641 TGAGAGCTGTTCAGTTATCTGTAGAGCACAATGCCAATCTTGAGTCTGCGAGGCAAGAGC 700
Query 599 TATGGTCAATGCATCCTAATGACCCTAATATTCTTGTGATGAAGCACCGCATGTGGCGAG 658
|||||||| |||||||||||||||| | ||||||||||||||||||||| ||||||| |
Sbjct 701 TATGGTCATTGCATCCTAATGACCCCACCATTCTTGTGATGAAGCACCGCTTGTGGCGTG 760
Query 659 TGAAAGGCGTCATCCAGGTCACAAGATCCATAGGTGATGCATACCTCAAAAGAGCAGAGT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 761 TGAAAGGCGTTATCCAGGTCACAAGATCCATAGGTGATGCATACCTCAAAAGAGCAGAGT 820
Query 719 TTAACAGAGAACCTTTGCTGCCCAAATTCAGACTACCAGAACATTTCACTAAGCCAATCC 778
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 821 TCAACAGAGAACCTTTGCTGCCCAAATTCAGACTACCAGAACATTTCACTAAGCCAATCC 880
Query 779 TTAGTGCTGATCCATCAGTCACCATTACCCGGCTTAGCCCACAAGACGAGTTTATGATTC 838
||||||| |||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 881 TTAGTGCGGATCCATCAGTCACCATTACGCGGCTTAGCCCACAAGATGAGTTTATAATTC 940
Query 839 TTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAATCAGGAAGCTGTTGACATTGTACATA 898
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||
Sbjct 941 TTGCTTCAGATGGGCTTTGGGAGCATCTTAGCAACCAGGAAGCTGTTGATATTGTGCATA 1000
Query 899 ATTCCCCGCGCCAAGGAATAGCAAGGAGACTACTTAAAGCTGCATTGAAGGAAGCAGCAA 958
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1001 ATTCCCCTCGACAAGGAATAGCAAGGAGACTACTTAAAGCTGCATTGAAGGAAGCAGCAA 1060
Query 959 AGAAAAGAGAGATGAGATACTCAGACCTA-CAAGAGATCCATCCTGGTGTAAGAAGGCAT 1017
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1061 AGAAAAGAGAGATGAGATACTCAGACCTAACA-GAGATCCATCCTGGTGTAAGAAGGCAT 1119
Query 1018 TTCCACGACGATATAACCGTTATTGTGATCTATCTCAACCCCCAACCGGTCAAAACCAAT 1077
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1120 TTCCACGACGATATAACCGTTATTGTGGTCTATCTCAACCCCCACCCGGTCAAAACCAAT 1179
Query 1078 TCTTGGGCTTCTCCTCTGTCAATTAGAGGGGGGTACCCAATGCATTCAACATCATGAACA 1137
||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1180 TCTTGGGCTTCACCTCTGTCAATTAGAGGGGGATACCCGATGCATTCAACATCATGAACA 1239
Query 1138 GATCTTACAGCAAAAAC 1154
|||||||| ||||||||
Sbjct 1240 GATCTTACGGCAAAAAC 1256
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56676415305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5