BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939678
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superf... 545 3e-154
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 446 3e-124
AT5G02990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 433 2e-120
> AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:703268-704437 FORWARD LENGTH=1065
Length=1065
Score = 545 bits (295), Expect = 3e-154
Identities = 591/729 (81%), Gaps = 39/729 (5%)
Strand=Plus/Plus
Query 69 TCGTTACCGTTCGACGTCATTCTCAATTGTCTGGCTCGTATCTCGAGATTCCATTATCCA 128
||||||||| ||| | |||||||||||| |||||||| ||||||||||| | ||||
Sbjct 124 TCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCGTCCA 183
Query 129 ACTCTAT-CTCTCGTCTCCAAGGGTTTCCGATCTCTCATCGCTTCTCCTGAGCTCGAGAC 187
|||| | || | ||| ||||| |||| ||||||||||||||||||||| |||||| |
Sbjct 184 TCTCTGTCCT-TGGTCAACAAGGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGAGGC 242
Query 188 GACACGATCCCGCATGGGAATAACAGGGGATCACCTCTGTGTCTTCATAGACCT-GAATA 246
|| || |||||||| ||| |||||| | ||||||||| ||||| | | || | |||||
Sbjct 243 CACGCGCTCCCGCATAGGAGTAACAGAGAATCACCTCTATGTCTGCTTGGA-GTCGAATA 301
Query 247 AGAAAAACCCTAATCCTCGCTGGTTC-CTAGTTTCCCCGATTCCC--A-CACAGAAA-TC 301
|||| ||||||||||||||||||||| | | || | || |||||| | ||||||| |
Sbjct 302 AGAACAACCCTAATCCTCGCTGGTTCAC-ACTTGCACCAATTCCCAAAGAACAGAAAGT- 359
Query 302 GAAACC---CATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACCATTGTCTCAAA 358
|||||| |||||||||||||||| ||||| |||||| ||| ||||| ||||||| |
Sbjct 360 GAAACCTATCATCCCTTCGTTTCCTTATCAACATCCCACATCATCAACTTTTGTCTCTAT 419
Query 359 TGGTTCAAAGATTTACATAATCGGAGGGTTTGTCAGGAGAAAGAGAAGCAAGAGAGTGTT 418
||| ||| |||||||||| |||||||| || || | | |||||||||||| |||||| ||
Sbjct 420 TGGCTCAGAGATTTACATCATCGGAGGCTTCGTTAAGCGAAAGAGAAGCAGGAGAGTCTT 479
Query 419 GATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACAT-GCGTCTACCTCGAG 477
| | ||||||||||||||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct 480 GGTTCTCGATTGTCGATCTCATCAATGTCGTAGGCTCCCCAACATGGC-TCTACCTCGAG 538
Query 478 TTTCTCCAGCCGCTGATGTAATCGCCGGTAAGATCTATGTGATTGGCGG-TTACGAGTCG 536
||||| ||||||||||||| |||| |||||||||||| ||| |||| || | | ||||
Sbjct 539 TTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGATCA-AAGTCT 597
Query 537 AACAATATCGATGAA-TGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCCATT 595
|| |||||||| || |||||||| |||| ||| ||| |||||||||| ||||||||| |
Sbjct 598 AAAAATATCGA-CAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGCCAAT 656
Query 596 ATTGCCCACAACACTTGATCTCACCGTC-CAAAAGAGTGAGGTTCCAGGTAAATTGGTTA 654
||| ||||||||| ||||||||||| | |||||||||| | ||||||||||||||||||
Sbjct 657 ATTTCCCACAACAGTTGATCTCACC-ACTCAAAAGAGTGTGTTTCCAGGTAAATTGGTTA 715
Query 655 TGGGTGGGAAAGTTTATGCCATGGATGATGTGTTTGA--GCTTA-CATTGT---TGAAGG 708
|||||||||||||||||| |||||||| | ||| || | ||| | ||| ||||
Sbjct 716 TGGGTGGGAAAGTTTATGACATGGATG--G-GTT-GAAAG-TTAAC-TTGAACCTGAAT- 768
Query 709 ATGTATGCTTAGTAGAGATAGAGTTTGTGTTGTGCCAAATATC-GCTTTGGTATGGGATG 767
| || ||| | ||||||||||| || ||||||||||||| | |||| | |||||
Sbjct 769 A-GT-TGCGTGGTAGAGATAGACAACATGATGTGCCAAATATCAG-TTTGCAAAGGGATA 825
Query 768 CTAGTTTGG 776
|||||||||
Sbjct 826 CTAGTTTGG 834
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 446 bits (241), Expect = 3e-124
Identities = 620/796 (78%), Gaps = 53/796 (7%)
Strand=Plus/Plus
Query 8 GACGACGGAAGAGATGAGTAAATCGTCAACAGAGTCTCCGACAACGACGACGTCGTTTTG 67
||||||| |||||| || |||||| || | | | || ||| | | ||||||||||||
Sbjct 3 GACGACGAAAGAGAAGAATAAATCATC-A-A-ACTCACCG-C--CTCCGACGTCGTTTTC 56
Query 68 TTCGTTACCGTTCGACGTCATTCTCAATTGTCTGGCTCGTATCTCGAGATTCCATTATCC 127
|||||||||| |||| || ||||||| ||| |||||||| |||| ||||||||||||||
Sbjct 57 TTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCCAGATTCCATTATCC 116
Query 128 AACTCTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCG-CTTCTCC-TGAGCTCGA- 184
||||||||| || |||| ||||||||||||||| ||| | | | || || ||||||| |
Sbjct 117 AACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TC-CCGTGAGCTCCAC 174
Query 185 GACGACACGATCCCGCATGGGAATAACAGGGGA-TCACCTCTGTGTCTTCATAGACCTGA 243
| | |||||||| |||| |||| ||| | || | ||||| |||| | ||||||||
Sbjct 175 G-CAACACGATCTTGCATCGGAAAAAC-CGAGAGTTTCCTCTACGTCTGCTTAGACCTGC 232
Query 244 ATAAGAA-----A---A-ACCCTAATCCTCGCTGGTTCCTAGTTTCCCCGATTCCCACAC 294
||| ||| | | || | ||| || ||||| |||||||||||||| ||| ||
Sbjct 233 ATAGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGTTTCCCCGATTACCAAAC 292
Query 295 AGAAATC-GAAACCCATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACCATTGTC 353
||||| | |||||| ||||||||| | | | | | | | ||||||||||| ||||
Sbjct 293 AGAAA-CTGAAACCTATCCCTTCG-GT--T-A-C--T-TGTC-AATCCTCAACCGTTGTA 342
Query 354 TCAAAT-GGTTCAAAGATTTACATAATCGGAGGGTTTG-TCAGGAGAAAGAGAAGCAAGA 411
|| ||| |||||||||||||||||||||||||| || | | | | || | || |||| ||
Sbjct 343 TC-AATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATG-GACATAGTAGCAGGA 400
Query 412 GAGTG-TTGATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACATGCGTCTA 470
|| || | | |||||||||||| |||||| ||| |||||||||||| | |||||| ||
Sbjct 401 GATTGATAG-TACTCGATTGTCCATCTCATGGATGGCGTAGACTCCCCGAGATGCGTGTA 459
Query 471 CCTCGAGTTTCTC-CAGCCGCTGATGTAATCGCCGGTAAGATCTATGTGATTGGCGGTTA 529
|||||| | |||| |||||||||||| || ||||||||| |||||||| || |
Sbjct 460 CCTCGA-CAAAACGCAGCAGCTGATGTAATCAACGATAAGATCTACGTGATTGGAGGCT- 517
Query 530 CGAG-TCGAACAATATCGATGAATGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGG 588
| || || ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 518 CTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGG 577
Query 589 AGCCATTATTGCCCACAACACTTGATCTCACCGTCCAAAAGAGTGAGGTTCCAGGTAAAT 648
||||| |||||||||||||||| ||||| || || |||| ||||| ||||||||||| |
Sbjct 578 AGCCAGTATTGCCCACAACACTAGATCTTACTGTTCAAATGAGTGTGGTTCCAGGTAGCT 637
Query 649 TGGTTATGGGTGGGAAAGTTTATGCCATGGATGATGTGTTTGA-GCTTA-CATTGTTGAA 706
|||| ||| ||||||||||||||| |||| | ||| | |||| ||||| | || |||
Sbjct 638 TGGTAATGAGTGGGAAAGTTTATGACATG-A--ATG-GATTGAAGCTTAACTTTCA-GAA 692
Query 707 GGATGTATGCTTAGTAGAGATAGAGTTTGTGTTGTGCCAAATATCGCTTTG-GTATGGGA 765
| || | ||||| || ||||||||| || ||||||||| | | |||| | | |||
Sbjct 693 GAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCCAAACAAAGGTTTGTGAAGGGG- 751
Query 766 TGCTAGTTTGGCGTGA 781
|| |||||||| ||||
Sbjct 752 TGTTAGTTTGGTGTGA 767
> AT5G02990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:700169-702630 FORWARD LENGTH=1647
Length=1647
Score = 433 bits (234), Expect = 2e-120
Identities = 461/569 (81%), Gaps = 22/569 (4%)
Strand=Plus/Plus
Query 113 GAGATTCCATTATCCAACTCTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCGCTTC 172
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 702 GAGATTCCATTATCCAACTCTATCACTCGTCTCCAAGGGTTTCCGATCACTCATCGCTTC 761
Query 173 TCCTGAGCTCGAGACGACACGATCCCGCA-TGGGAATAACAGGGGATCACCTCTGTGTCT 231
|||||||||||| | ||||| ||| || |||| | ||| | | ||||||| |||||||
Sbjct 762 GCCTGAGCTCGAGGCCACACGTTCCTTCATTGGGGA-AACCGAGAATCACCTTTGTGTCT 820
Query 232 TCATAGACCTGAATAAG-A-AA-AACCCTAATCCTCGCTGGTTC-CTAGTTTCCCCGATT 287
| || |||| || ||| | || ||| |||||||||||||||| | | ||||||||||
Sbjct 821 GCTTAAACCTCAACAAGAACAACAACTATAATCCTCGCTGGTTCAC-ACTTTCCCCGATA 879
Query 288 CCCACACAGAAATCGAAACCCATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACC 347
||| |||||||| |||| ||||||||| | || ||||||||||||||||||||||| |
Sbjct 880 GCCAAACAGAAATTGAAATCCATCCCTTGGCATCGTCATCAATATCCCAAATCCTCAA-C 938
Query 348 A-TTGTCT-CAAATGGTTCAAAGATTTACATAATCGGAGGGTTTGTCAG-GAGAA-AGAG 403
| |||| | ||||||||||| | ||||||||| ||||||| || || | | ||| | ||
Sbjct 939 AGTTGT-TGCAAATGGTTCAGATATTTACATAGTCGGAGGCTTCGTTTGCG-GAACA-AG 995
Query 404 AAGCAAGAGAGT-GTTGATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACA 462
||||||||||| ||| | ||||| |||||||||| ||||| |||||||||| | |||
Sbjct 996 TAGCAAGAGAGTATTTG-TTTTCGATAGTCGATCTCATCAATGGCGTAGACTCCACGACA 1054
Query 463 TGCGTCTACCTCGAGTTTCTCCAGCCGCT-GATGTAATCG-CCGGTAAGATCTATGTGAT 520
||||| ||||||| |||||| ||| | | || || | | | | ||||||||||| ||
Sbjct 1055 TGCGTTTACCTCGTGTTTCTGCAGTTG-TAAATATAGTTGACAAG-AAGATCTATGTTAT 1112
Query 521 TGGCGGTTACGAGTCGAACAATATCGATGAATGGGGAGAGGTTTATGACCCAAAGACCCA 580
||| || ||| || | | |||||| | || || |||||||||||||| ||||| |||||
Sbjct 1113 TGGAGGCTACAAGCCCAGGAATATCAAAGATTGTGGAGAGGTTTATGATCCAAATACCCA 1172
Query 581 AACTTGGGAGCCATTATTGCCCACAACACTTGATCTCACCGTCCAAAAGAGTGAGGTTCC 640
|||||||||||||||||||||||| ||| | |||||||| | ||||| ||| |||| |
Sbjct 1173 AACTTGGGAGCCATTATTGCCCACGACAGTAAATCTCACCATTCAAAACTGTGTGGTTTC 1232
Query 641 AGGTAAATTGGTTATGGGTGGGAAA-GTT 668
|||| ||||| ||||| |||||| |||
Sbjct 1233 AGGTGGCTTGGTAATGGGCGGGAAACGTT 1261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5