BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939678 Length=1129 Score E Sequences producing significant alignments: (Bits) Value AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superf... 545 3e-154 AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 446 3e-124 AT5G02990.1 | Symbols: | Galactose oxidase/kelch repeat superf... 433 2e-120 > AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:703268-704437 FORWARD LENGTH=1065 Length=1065 Score = 545 bits (295), Expect = 3e-154 Identities = 591/729 (81%), Gaps = 39/729 (5%) Strand=Plus/Plus Query 69 TCGTTACCGTTCGACGTCATTCTCAATTGTCTGGCTCGTATCTCGAGATTCCATTATCCA 128 ||||||||| ||| | |||||||||||| |||||||| ||||||||||| | |||| Sbjct 124 TCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGTGTCTCGAGATTCTACCGTCCA 183 Query 129 ACTCTAT-CTCTCGTCTCCAAGGGTTTCCGATCTCTCATCGCTTCTCCTGAGCTCGAGAC 187 |||| | || | ||| ||||| |||| ||||||||||||||||||||| |||||| | Sbjct 184 TCTCTGTCCT-TGGTCAACAAGGAATTCCAATCTCTCATCGCTTCTCCTGATCTCGAGGC 242 Query 188 GACACGATCCCGCATGGGAATAACAGGGGATCACCTCTGTGTCTTCATAGACCT-GAATA 246 || || |||||||| ||| |||||| | ||||||||| ||||| | | || | ||||| Sbjct 243 CACGCGCTCCCGCATAGGAGTAACAGAGAATCACCTCTATGTCTGCTTGGA-GTCGAATA 301 Query 247 AGAAAAACCCTAATCCTCGCTGGTTC-CTAGTTTCCCCGATTCCC--A-CACAGAAA-TC 301 |||| ||||||||||||||||||||| | | || | || |||||| | ||||||| | Sbjct 302 AGAACAACCCTAATCCTCGCTGGTTCAC-ACTTGCACCAATTCCCAAAGAACAGAAAGT- 359 Query 302 GAAACC---CATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACCATTGTCTCAAA 358 |||||| |||||||||||||||| ||||| |||||| ||| ||||| ||||||| | Sbjct 360 GAAACCTATCATCCCTTCGTTTCCTTATCAACATCCCACATCATCAACTTTTGTCTCTAT 419 Query 359 TGGTTCAAAGATTTACATAATCGGAGGGTTTGTCAGGAGAAAGAGAAGCAAGAGAGTGTT 418 ||| ||| |||||||||| |||||||| || || | | |||||||||||| |||||| || Sbjct 420 TGGCTCAGAGATTTACATCATCGGAGGCTTCGTTAAGCGAAAGAGAAGCAGGAGAGTCTT 479 Query 419 GATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACAT-GCGTCTACCTCGAG 477 | | ||||||||||||||||| ||||| ||||| ||||||||||| || ||||||||||| Sbjct 480 GGTTCTCGATTGTCGATCTCATCAATGTCGTAGGCTCCCCAACATGGC-TCTACCTCGAG 538 Query 478 TTTCTCCAGCCGCTGATGTAATCGCCGGTAAGATCTATGTGATTGGCGG-TTACGAGTCG 536 ||||| ||||||||||||| |||| |||||||||||| ||| |||| || | | |||| Sbjct 539 TTTCTGCAGCCGCTGATGTCATCGACGGTAAGATCTACGTGGTTGGAGGATCA-AAGTCT 597 Query 537 AACAATATCGATGAA-TGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGGAGCCATT 595 || |||||||| || |||||||| |||| ||| ||| |||||||||| ||||||||| | Sbjct 598 AAAAATATCGA-CAATTGGGGAGAAGTTTTTGATCCAGAGACCCAAACGTGGGAGCCAAT 656 Query 596 ATTGCCCACAACACTTGATCTCACCGTC-CAAAAGAGTGAGGTTCCAGGTAAATTGGTTA 654 ||| ||||||||| ||||||||||| | |||||||||| | |||||||||||||||||| Sbjct 657 ATTTCCCACAACAGTTGATCTCACC-ACTCAAAAGAGTGTGTTTCCAGGTAAATTGGTTA 715 Query 655 TGGGTGGGAAAGTTTATGCCATGGATGATGTGTTTGA--GCTTA-CATTGT---TGAAGG 708 |||||||||||||||||| |||||||| | ||| || | ||| | ||| |||| Sbjct 716 TGGGTGGGAAAGTTTATGACATGGATG--G-GTT-GAAAG-TTAAC-TTGAACCTGAAT- 768 Query 709 ATGTATGCTTAGTAGAGATAGAGTTTGTGTTGTGCCAAATATC-GCTTTGGTATGGGATG 767 | || ||| | ||||||||||| || ||||||||||||| | |||| | ||||| Sbjct 769 A-GT-TGCGTGGTAGAGATAGACAACATGATGTGCCAAATATCAG-TTTGCAAAGGGATA 825 Query 768 CTAGTTTGG 776 ||||||||| Sbjct 826 CTAGTTTGG 834 > AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr3:16916072-16917184 FORWARD LENGTH=1113 Length=1113 Score = 446 bits (241), Expect = 3e-124 Identities = 620/796 (78%), Gaps = 53/796 (7%) Strand=Plus/Plus Query 8 GACGACGGAAGAGATGAGTAAATCGTCAACAGAGTCTCCGACAACGACGACGTCGTTTTG 67 ||||||| |||||| || |||||| || | | | || ||| | | |||||||||||| Sbjct 3 GACGACGAAAGAGAAGAATAAATCATC-A-A-ACTCACCG-C--CTCCGACGTCGTTTTC 56 Query 68 TTCGTTACCGTTCGACGTCATTCTCAATTGTCTGGCTCGTATCTCGAGATTCCATTATCC 127 |||||||||| |||| || ||||||| ||| |||||||| |||| |||||||||||||| Sbjct 57 TTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTCTCCAGATTCCATTATCC 116 Query 128 AACTCTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCG-CTTCTCC-TGAGCTCGA- 184 ||||||||| || |||| ||||||||||||||| ||| | | | || || ||||||| | Sbjct 117 AACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC-TC-CCGTGAGCTCCAC 174 Query 185 GACGACACGATCCCGCATGGGAATAACAGGGGA-TCACCTCTGTGTCTTCATAGACCTGA 243 | | |||||||| |||| |||| ||| | || | ||||| |||| | |||||||| Sbjct 175 G-CAACACGATCTTGCATCGGAAAAAC-CGAGAGTTTCCTCTACGTCTGCTTAGACCTGC 232 Query 244 ATAAGAA-----A---A-ACCCTAATCCTCGCTGGTTCCTAGTTTCCCCGATTCCCACAC 294 ||| ||| | | || | ||| || ||||| |||||||||||||| ||| || Sbjct 233 ATAGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAGTTTCCCCGATTACCAAAC 292 Query 295 AGAAATC-GAAACCCATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACCATTGTC 353 ||||| | |||||| ||||||||| | | | | | | | ||||||||||| |||| Sbjct 293 AGAAA-CTGAAACCTATCCCTTCG-GT--T-A-C--T-TGTC-AATCCTCAACCGTTGTA 342 Query 354 TCAAAT-GGTTCAAAGATTTACATAATCGGAGGGTTTG-TCAGGAGAAAGAGAAGCAAGA 411 || ||| |||||||||||||||||||||||||| || | | | | || | || |||| || Sbjct 343 TC-AATCGGTTCAAAGATTTACATAATCGGAGGCTTCGTTGATG-GACATAGTAGCAGGA 400 Query 412 GAGTG-TTGATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACATGCGTCTA 470 || || | | |||||||||||| |||||| ||| |||||||||||| | |||||| || Sbjct 401 GATTGATAG-TACTCGATTGTCCATCTCATGGATGGCGTAGACTCCCCGAGATGCGTGTA 459 Query 471 CCTCGAGTTTCTC-CAGCCGCTGATGTAATCGCCGGTAAGATCTATGTGATTGGCGGTTA 529 |||||| | |||| |||||||||||| || ||||||||| |||||||| || | Sbjct 460 CCTCGA-CAAAACGCAGCAGCTGATGTAATCAACGATAAGATCTACGTGATTGGAGGCT- 517 Query 530 CGAG-TCGAACAATATCGATGAATGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGG 588 | || || ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 518 CTAGTTCCAACAATATCGAGGATTGGGGAGAGGTTTATGACCCAAAGACCCAAACTTGGG 577 Query 589 AGCCATTATTGCCCACAACACTTGATCTCACCGTCCAAAAGAGTGAGGTTCCAGGTAAAT 648 ||||| |||||||||||||||| ||||| || || |||| ||||| ||||||||||| | Sbjct 578 AGCCAGTATTGCCCACAACACTAGATCTTACTGTTCAAATGAGTGTGGTTCCAGGTAGCT 637 Query 649 TGGTTATGGGTGGGAAAGTTTATGCCATGGATGATGTGTTTGA-GCTTA-CATTGTTGAA 706 |||| ||| ||||||||||||||| |||| | ||| | |||| ||||| | || ||| Sbjct 638 TGGTAATGAGTGGGAAAGTTTATGACATG-A--ATG-GATTGAAGCTTAACTTTCA-GAA 692 Query 707 GGATGTATGCTTAGTAGAGATAGAGTTTGTGTTGTGCCAAATATCGCTTTG-GTATGGGA 765 | || | ||||| || ||||||||| || ||||||||| | | |||| | | ||| Sbjct 693 GAATATTTGCTTGGTGGAGATAGAGAACATGATGTGCCAAACAAAGGTTTGTGAAGGGG- 751 Query 766 TGCTAGTTTGGCGTGA 781 || |||||||| |||| Sbjct 752 TGTTAGTTTGGTGTGA 767 > AT5G02990.1 | Symbols: | Galactose oxidase/kelch repeat superfamily protein | chr5:700169-702630 FORWARD LENGTH=1647 Length=1647 Score = 433 bits (234), Expect = 2e-120 Identities = 461/569 (81%), Gaps = 22/569 (4%) Strand=Plus/Plus Query 113 GAGATTCCATTATCCAACTCTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCGCTTC 172 |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| Sbjct 702 GAGATTCCATTATCCAACTCTATCACTCGTCTCCAAGGGTTTCCGATCACTCATCGCTTC 761 Query 173 TCCTGAGCTCGAGACGACACGATCCCGCA-TGGGAATAACAGGGGATCACCTCTGTGTCT 231 |||||||||||| | ||||| ||| || |||| | ||| | | ||||||| ||||||| Sbjct 762 GCCTGAGCTCGAGGCCACACGTTCCTTCATTGGGGA-AACCGAGAATCACCTTTGTGTCT 820 Query 232 TCATAGACCTGAATAAG-A-AA-AACCCTAATCCTCGCTGGTTC-CTAGTTTCCCCGATT 287 | || |||| || ||| | || ||| |||||||||||||||| | | |||||||||| Sbjct 821 GCTTAAACCTCAACAAGAACAACAACTATAATCCTCGCTGGTTCAC-ACTTTCCCCGATA 879 Query 288 CCCACACAGAAATCGAAACCCATCCCTTCGTTTCCTCATCAATATCCCAAATCCTCAACC 347 ||| |||||||| |||| ||||||||| | || ||||||||||||||||||||||| | Sbjct 880 GCCAAACAGAAATTGAAATCCATCCCTTGGCATCGTCATCAATATCCCAAATCCTCAA-C 938 Query 348 A-TTGTCT-CAAATGGTTCAAAGATTTACATAATCGGAGGGTTTGTCAG-GAGAA-AGAG 403 | |||| | ||||||||||| | ||||||||| ||||||| || || | | ||| | || Sbjct 939 AGTTGT-TGCAAATGGTTCAGATATTTACATAGTCGGAGGCTTCGTTTGCG-GAACA-AG 995 Query 404 AAGCAAGAGAGT-GTTGATACTCGATTGTCGATCTCAACAATGCCGTAGACTCCCCAACA 462 ||||||||||| ||| | ||||| |||||||||| ||||| |||||||||| | ||| Sbjct 996 TAGCAAGAGAGTATTTG-TTTTCGATAGTCGATCTCATCAATGGCGTAGACTCCACGACA 1054 Query 463 TGCGTCTACCTCGAGTTTCTCCAGCCGCT-GATGTAATCG-CCGGTAAGATCTATGTGAT 520 ||||| ||||||| |||||| ||| | | || || | | | | ||||||||||| || Sbjct 1055 TGCGTTTACCTCGTGTTTCTGCAGTTG-TAAATATAGTTGACAAG-AAGATCTATGTTAT 1112 Query 521 TGGCGGTTACGAGTCGAACAATATCGATGAATGGGGAGAGGTTTATGACCCAAAGACCCA 580 ||| || ||| || | | |||||| | || || |||||||||||||| ||||| ||||| Sbjct 1113 TGGAGGCTACAAGCCCAGGAATATCAAAGATTGTGGAGAGGTTTATGATCCAAATACCCA 1172 Query 581 AACTTGGGAGCCATTATTGCCCACAACACTTGATCTCACCGTCCAAAAGAGTGAGGTTCC 640 |||||||||||||||||||||||| ||| | |||||||| | ||||| ||| |||| | Sbjct 1173 AACTTGGGAGCCATTATTGCCCACGACAGTAAATCTCACCATTCAAAACTGTGTGGTTTC 1232 Query 641 AGGTAAATTGGTTATGGGTGGGAAA-GTT 668 |||| ||||| ||||| |||||| ||| Sbjct 1233 AGGTGGCTTGGTAATGGGCGGGAAACGTT 1261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55371201135 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5