BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939679
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superf... 527 1e-148
AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superf... 477 1e-133
AT5G03020.1 | Symbols: | Galactose oxidase/kelch repeat superf... 449 2e-125
AT5G03010.1 | Symbols: | Galactose oxidase/kelch repeat superf... 143 4e-33
> AT5G03000.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:703268-704437 FORWARD LENGTH=1065
Length=1065
Score = 527 bits (285), Expect = 1e-148
Identities = 534/652 (82%), Gaps = 26/652 (4%)
Strand=Plus/Plus
Query 73 CTCCTCCGAC-GTCGTTTTCTTCGTTACCGTACGACTTGGTTCTGAATTGTTTGGCTCGT 131
|||||||||| || ||||| ||||||||| |||| || |||| |||||||||||||||
Sbjct 104 CTCCTCCGACAGT-ATTTTCATCGTTACCGGACGAATTAATTCTCAATTGTTTGGCTCGT 162
Query 132 GTCTCGAGAATCCGTTATCCAACTTTAT-CTCTCGTCTCCAAGGGTTTCCGATCTCTCAT 190
||||||||| || |||| || | | || | ||| ||||| |||| |||||||||
Sbjct 163 GTCTCGAGATTCTACCGTCCATCTCTGTCCT-TGGTCAACAAGGAATTCCAATCTCTCAT 221
Query 191 CGCTTCCCCTGAGCTCGAGGCCACACGATTCTC-CATGGGAAAAACCGAGGATTGCATCT 249
|||||| ||||| ||||||||||| || || | ||| ||| ||| ||| || | |||
Sbjct 222 CGCTTCTCCTGATCTCGAGGCCACGCG-CTCCCGCATAGGAGTAACAGAGAATCACCTCT 280
Query 250 TTGTTTGCTTAAACCTC-AATCAGAACAACCCTAACCCTAGCTTGTTCACACTTTCCCCA 308
||| ||||| | || ||| ||||||||||||| ||| ||| |||||||||| | |||
Sbjct 281 ATGTCTGCTTGGA-GTCGAATAAGAACAACCCTAATCCTCGCTGGTTCACACTTGCACCA 339
Query 309 ATTCCCAAACAAGAGGAA-T--TA-CTACCCATCCCTTGGTTTCCTTATGATCAACATCC 364
||||||||| || || || | | ||| |||||||| |||||| | | ||||||||||
Sbjct 340 ATTCCCAAAGAACAGAAAGTGAAACCTA-TCATCCCTTCGTTTCC-T-T-ATCAACATCC 395
Query 365 CAAATAC-CCAACCATTCT-TGCAATTGG-TGCAGAGATTTACATAATCGGAGGCTTCCT 421
|| || | |||| || | | | ||||| | ||||||||||||| |||||||||||| |
Sbjct 396 CACAT-CATCAACTTTTGTCT-CTATTGGCT-CAGAGATTTACATCATCGGAGGCTTCGT 452
Query 422 CAAGAGAACGAGAAGCAAGAGAGTGTTGATTCTCGATTGTCTATCTCATCAATGGCGTAG 481
||| ||| |||||||| |||||| ||| |||||||||||| |||||||||||| |||||
Sbjct 453 TAAGCGAAAGAGAAGCAGGAGAGTCTTGGTTCTCGATTGTCGATCTCATCAATGTCGTAG 512
Query 482 ACTCCCAAAAAT-GCGTCTATCTCGAGCTTCTGCTGCCGCGGATGTAATCGACGGTAAGA 540
||||| || || || |||| |||||| |||||| ||||| ||||| |||||||||||||
Sbjct 513 GCTCCCCAACATGGC-TCTACCTCGAGTTTCTGCAGCCGCTGATGTCATCGACGGTAAGA 571
Query 541 TCTACGTGATTGGAGGCA-CAAGGTCCAAGAATATCGAGAATTGGGGAGAGGTTTTTGAC 599
|||||||| ||||||| | ||| ||| || |||||||| ||||||||||| ||||||||
Sbjct 572 TCTACGTGGTTGGAGG-ATCAAAGTCTAAAAATATCGACAATTGGGGAGAAGTTTTTGAT 630
Query 600 CCAAAGACCCAAACTTGGGAGCCAATATTTCCCACAACACTTGATCTCACCGTTCAAAAG 659
||| |||||||||| |||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 631 CCAGAGACCCAAACGTGGGAGCCAATATTTCCCACAACAGTTGATCTCACCACTCAAAAG 690
Query 660 AGTGTGGTTCCAGGTAGGTTGGTAATGGGTGGGAAAGTTTATGACATGGATG 711
|||||| ||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 691 AGTGTGTTTCCAGGTAAATTGGTTATGGGTGGGAAAGTTTATGACATGGATG 742
> AT3G46050.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr3:16916072-16917184 FORWARD LENGTH=1113
Length=1113
Score = 477 bits (258), Expect = 1e-133
Identities = 805/1052 (77%), Gaps = 105/1052 (10%)
Strand=Plus/Plus
Query 75 CCTCCGACGTCGTTTTCTTCGTTACCGTACGACTTGGTTCTGAATTGTTTGGCTCGTGTC 134
||||||||||||||||||||||||||| ||||| | ||||| || |||||||||||||||
Sbjct 40 CCTCCGACGTCGTTTTCTTCGTTACCGGACGACATCGTTCTCAACTGTTTGGCTCGTGTC 99
Query 135 TCGAGAATCCGTTATCCAACTTTATCTCTCGTCTCCAAGGGTTTCCGATCTCTCATCG-C 193
|| ||| ||| |||||||||| |||| || |||| ||||||||||||||| ||| | | |
Sbjct 100 TCCAGATTCCATTATCCAACTCTATCCCTAGTCTGCAAGGGTTTCCGATCACTCCTAGAC 159
Query 194 TTCCCCTGAGCTCGAGGCCACACGATTC-TCCATGGGAAAAACCGAGGA-TTGCATCTTT 251
|||| ||||||| | || |||||| || | ||| ||||||||||| || || | |||
Sbjct 160 -TCCCGTGAGCTCCACGCAACACGA-TCTTGCATCGGAAAAACCGA-GAGTTTCCTCTAC 216
Query 252 GTTTGCTTAAACCT-CAATCA-GAA---C-AACC---CTAACC-CTA-GCTTGTTCACAC 300
|| |||||| |||| | || | ||| | | || || || | | | | ||| | |
Sbjct 217 GTCTGCTTAGACCTGC-AT-AGGAATTGCTATCCAGACTGTCCTCCACGATGGTTTATAG 274
Query 301 TTTCCCCAATTCCCAAACAAGAGGAA-TTACTACCCATCCCTT-GGTTTCCTTATGATCA 358
||||||| ||| |||||| ||| || | | ||| ||||||| || || | | || ||
Sbjct 275 TTTCCCCGATTACCAAAC-AGA--AACTGA-AACCTATCCCTTCGG-TTAC-T-TG-TC- 325
Query 359 ACATCCCAAATACCCAACCATTCT-TGCAATTGGTGCAGAGATTTACATAATCGGAGGCT 417
| || || | ||||| || | | |||| ||| || |||||||||||||||||||||
Sbjct 326 A-AT-CC---T---CAACCGTTGTAT-CAATCGGTTCAAAGATTTACATAATCGGAGGCT 376
Query 418 TC-CTCAAGAGAAC-GAGAAGCAAGAGAGTG-TTGATTCTCGATTGTCTATCTCATCAAT 474
|| | | | | || || |||| |||| || | | | |||||||||| ||||||| ||
Sbjct 377 TCGTTGATG-G-ACATAGTAGCAGGAGATTGATAG-TACTCGATTGTCCATCTCATGGAT 433
Query 475 GGCGTAGACTCCCAAAAATGCGTCTATCTCGAGC--TTCTGCTGCCGCGGATGTAATCGA 532
||||||||||||| | |||||| || ||||| | | || || || ||||||||| |
Sbjct 434 GGCGTAGACTCCCCGAGATGCGTGTACCTCGA-CAAAAC-GCAGCAGCTGATGTAATCAA 491
Query 533 CGGTAAGATCTACGTGATTGGAGGCACAAGGTCCAAGAATATCGAGAATTGGGGAGAGGT 592
|| |||||||||||||||||||||| | || ||||| ||||||||| |||||||||||||
Sbjct 492 CGATAAGATCTACGTGATTGGAGGCTCTAGTTCCAACAATATCGAGGATTGGGGAGAGGT 551
Query 593 TTTTGACCCAAAGACCCAAACTTGGGAGCCAATATTTCCCACAACACTTGATCTCACCGT 652
|| |||||||||||||||||||||||||||| |||| ||||||||||| ||||| || ||
Sbjct 552 TTATGACCCAAAGACCCAAACTTGGGAGCCAGTATTGCCCACAACACTAGATCTTACTGT 611
Query 653 TCAAAAGAGTGTGGTTCCAGGTAGGTTGGTAATGGGTGGGAAAGTTTATGACATGGATG- 711
||||| |||||||||||||||||| ||||||||| |||||||||||||||||||| |||
Sbjct 612 TCAAATGAGTGTGGTTCCAGGTAGCTTGGTAATGAGTGGGAAAGTTTATGACATGAATGG 671
Query 712 ATTTGTTTCAGCTTAGA-TTGCTCAAGGATGTTTTCTTAGTAGAGATAGAAAATGTGTTG 770
||| | |||||| | || | ||| || ||| ||| || |||||||| || || ||
Sbjct 672 ATT-GA---AGCTTA-ACTTTCAGAAGAATATTTGCTTGGTGGAGATAGAGAACATGATG 726
Query 771 TGCCAAATATC--TCTAGCGAATGGGTATCTACTTTGGCGTGATCCTA-AGGCAGATGGA 827
||||||| | | | | ||| |||| | || ||||| |||| || | ||| |||| |
Sbjct 727 TGCCAAACAAAGGTTT-GTGAAGGGGTGT-TAGTTTGGTGTGAACC-AGAGGAAGATCG- 782
Query 828 TCTGAGTGGAGTAACGTTT--TGGGACTT-AAG--CTTG--AA--G---AACTGTCCCC- 874
| | |||| || || || ||| |||| ||| ||| || | |||| || ||
Sbjct 783 TG-G-GTGGTGTC-CGGTTGATGG-ACTTGAAGGACTTCCCAATAGGCCAACT-TCTCCT 837
Query 875 G-T-ATCA-ACCTTATTGTGTGGAAAACTCCGGCGGAGAAAGAAGAGTGAA-AGTGTGGT 930
| | ||| |||| | |||| | | |||| | ||| ||||||||| || ||| ||||
Sbjct 838 GGTTATCTTACCTC---G-GTGGCACATTCCGACCGAGGAAGAAGAGT-AACAGTTTGGT 892
Query 931 GGGAGTCGG-TG-GTGA-ATCGCCGTCAAGGTCGCAGACGTCGCCGTACTAATGAATTTC 987
||||||||| || || | |||| | | | |||| || | | | | ||||| |||| |
Sbjct 893 GGGAGTCGGCTGTGTTACATCGTC-T-A-GGTCCCAAA--T-G--G-ACTAAGGAATGTA 943
Query 988 ACACAGAGATTTGGTGTGCAGAGGTTTCGTTTGAGAGACGAGGT-TTAGGAGAGCTTTGG 1046
| ||||||||||||||||||||| |||||||||||||||| ||| || ||| || ||||
Sbjct 944 AAACAGAGATTTGGTGTGCAGAGATTTCGTTTGAGAGACGCGGTGTT-GGAAAGGTTTGT 1002
Query 1047 GGATTCGTTGAATGGTCTAAAAATGTGTTTAC 1078
||||| |||||||||||||| ||||| |||||
Sbjct 1003 GGATTTGTTGAATGGTCTAAGAATGTCTTTAC 1034
> AT5G03020.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:707257-708396 FORWARD LENGTH=1140
Length=1140
Score = 449 bits (243), Expect = 2e-125
Identities = 499/619 (81%), Gaps = 32/619 (5%)
Strand=Plus/Plus
Query 59 AGAGTCTCCTCCTCCTCCTCCGACGTCGTTTTCTTCGTTACCGTACGACTTGGTTCT-GA 117
||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||| ||
Sbjct 27 AGAGTCTCCTCCTCCTCCTCCGACGTCGTTTTCTTCGTTACCGGACGACGTCGCTCTCGA 86
Query 118 ATTGTTTGGCTCGTGTCTCGAGAATCCGTTATCCAACT-TTATCTCTCGTCTCCAAGGGT 176
|||| ||||||| | |||||| ||| |||||||||| || ||||||||||||||||||
Sbjct 87 -TTGTCGGGCTCGTATATCGAGATTCCATTATCCAACTCTT-TCTCTCGTCTCCAAGGGT 144
Query 177 TTCCGATCTCTCATCGCTTCCCCTGAGCTCGAGGCCACACGATTCTCCATGGGAAAAACC 236
||| || |||||||||| ||||| ||||||||||||||||||| || || |||||| ||
Sbjct 145 TTCAGAACTCTCATCGCCTCCCCGGAGCTCGAGGCCACACGATCCTTTATCGGAAAA-CC 203
Query 237 -GAGGATTGCATCTTTGTTTGCTTAAACCTCAATCAGAACAACCCTAACCCTAGCTTGTT 295
||| || | ||| || ||||| | || || | || |||||||| ||| || |||
Sbjct 204 AGAGAATCACCTCTGCGTCTGCTTGAGGCTGTAT-A-AA-AACCCTAATCCTCTCTGGTT 260
Query 296 CACACTTTCCCCAATTCCCAAACAAGAGGAATT-ACTACCCATC--CCT-TGGTTTCCTT 351
|| | ||||||||||||| ||||| || |||| | ||||||| || |||||||||
Sbjct 261 CATATTTTCCCCAATTCCGAAACA-GA--AATTGAA-ACCCATCGTCCCATGGTTTCCTA 316
Query 352 ATGATCAACATCC-CAAATACCCAACCATTCT-TGCAATTGGTGCAGAGATTTACATAAT 409
| | ||| |||| ||| ||||| ||| || | | ||| |||| || |||| ||||||||
Sbjct 317 ACCAACAATATCCTCAA-TACCCGACCGTTGTCT-CAAATGGTTCACAGATATACATAAT 374
Query 410 CGGAGGCTTCCTCAAGAGAACGAGAAGCAAGAGAGTGTTGATTCTCGATTGTCTATCTCA 469
||| || ||| | | ||||| ||||||||| ||||||| |||| | |||| || | || |
Sbjct 375 CGGTGGATTCGTTAGGAGAAGGAGAAGCAACAGAGTGTCGATTTTTGATTATCGAACTTA 434
Query 470 TCAATGGCGTAGACTCCCAAAAATGCGTCTATCTCGAGCTTCTGCTGCCGCGGATGTAAT 529
|||||||||||||||||| |||||||||| | |||||| || | | |||||| ||||||
Sbjct 435 TCAATGGCGTAGACTCCCCAAAATGCGTCAACCTCGAGTTTATCCCGCCGCGTCTGTAAT 494
Query 530 CGACGGTAAGATCTACGTGATTGGAGGCA-CA-AGG-TCCAAG---A-A--TATCGAGAA 580
||||||||||||||| |||||||||||| || ||| |||| | | | ||| |||||
Sbjct 495 CGACGGTAAGATCTATGTGATTGGAGGCTTCAGAGGCTCCATGCCCACAGATATTGAGAA 554
Query 581 TTGGGGAGAGGTTTTTGACCCAAAGACCCAA-ACTTGGGAGCCAATATTTCCCACAACAC 639
| ||||| |||| ||| ||||||||| || ||||||||||||||||| | |||| |||
Sbjct 555 CTCAGGAGAAGTTTATGATCCAAAGACC-AATACTTGGGAGCCAATATTGCTCACATCAC 613
Query 640 TTGATCTCACCGTTCAAAA 658
|||||||||| ||||||||
Sbjct 614 TTGATCTCACTGTTCAAAA 632
> AT5G03010.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr5:704584-705538 FORWARD LENGTH=955
Length=955
Score = 143 bits (77), Expect = 4e-33
Identities = 319/430 (74%), Gaps = 39/430 (9%)
Strand=Plus/Plus
Query 750 GTAGAGATAGAAAATGTGTTGTGCCAAATATCTCTA-GCGAATGGGTATCTACTTTGGCG 808
|||||||| || || |||| ||||| |||| | || || ||||| | ||| |||||||
Sbjct 413 GTAGAGATTGACAAGGTGTCGTGCCTGATATTTTTATCCG-ATGGGAAGCTATTTTGGCG 471
Query 809 TGATCCTAAGGCAGATGGATCTGAGTGGAGTAACG-T-T-TTGGGACTTAAGCTTGAAG- 864
||| | || ||| | || | |||| || ||| | | | |||||| | | || ||
Sbjct 472 TGAAAC-AAAGCA-A-GGTTTTGAGAGGTGTAGTGTTATATTGGGA--GATG-ATG-AGC 524
Query 865 AACTGTCCCCGTATCAACCTT-ATT-GTGTGGAAAACTCCGGCGGAGAAAGAAGAGTGAA 922
|| ||||| | |||||| ||| || | |||| |||| ||| ||||| | |||||||||
Sbjct 525 AAGTGTCCTCTTATCAA-CTTGTTTCG-GTGGCAAACGCCGCCGGAGGAGGAAGAGTGAC 582
Query 923 AGTGTGGTGGGAGTCGGTGGTGAATCGCCGTCAAGG-TCGCAGACGTCGC-C-G-TACTA 978
||| |||||| |||||| ||| || | || || || | | || || | | |||
Sbjct 583 AGTTTGGTGGAAGTCGG-GGTTAAAAG--TTC-TGGATCTCTTAAGTGGCACTGAGACTT 638
Query 979 ATGAAT-TTCACACAGAGATTTGGTGTGCAGAGGTTTCGTTTGAGAGACGAGGTTTAGGA 1037
|||| || ||||| | ||| ||||||||||| |||||||||||||| |||||||| ||
Sbjct 639 GGGAATGTT-ACACAAATATTCGGTGTGCAGAGATTTCGTTTGAGAGAAGAGGTTTAAGA 697
Query 1038 GAGCTTTGGGGATTCGTTGAATGGTCTAAAAATGTGTTTACCTGT-GATGGATTTGACCC 1096
|||||||||||||||||||||||||||| | | ||||||||| || ||||||| ||||
Sbjct 698 GAGCTTTGGGGATTCGTTGAATGGTCTAGAGAGGTGTTTACC-GTTGATGGATATGACGA 756
Query 1097 TAACCCTTTTTCTGGTTTATTTTTGCAAT-CAGCTATTGTCACAC-ATTGATCATTGAGA 1154
|| | || | | ||| ||||| ||| | |||||||| || | |||||||| || ||
Sbjct 757 TA-C--TTA--C-GATTTCTTTTTA-AATTCTGCTATTGTGAC-CTATTGATCAGTGGGA 808
Query 1155 TTTTATTTTA 1164
||||| |||
Sbjct 809 CTTTATCTTA 818
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57178420755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5