BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939681

Length=379
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03030.1 | Symbols:  | Chaperone DnaJ-domain superfamily pro...   597    2e-170


> AT5G03030.1 | Symbols:  | Chaperone DnaJ-domain superfamily protein 
| chr5:708318-709703 REVERSE LENGTH=690
Length=690

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 353/367 (96%), Gaps = 3/367 (1%)
 Strand=Plus/Plus

Query  15   TGAATAATGGCTACGCCAATGATTGCAGGTGCTGCTGTAGCTGCAGCTGCT-TATGCTGG  73
            |||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct  185  TGAATAATGGCTACGCCAATGATTGCAGGTGCTGCTGTAGCTGCTGCTGCTGT-TGCTGG  243

Query  74   TAGATATGGTATATTGGCTTGGCAAGCTTTCAAGGCAAGACCACGTGTTCCTAGAATGCG  133
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  244  TAGATATGGTATATTGGCTTGGCAAGCTTTCAAGGCAAGACCTCGTGTTCCTAGAATGCG  303

Query  134  CAGGTTTTATGAAGGTGGTTTCCAAAGTTCTATGACACGCCGAGAAGCTGCTCTCATTCT  193
            |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  304  CAGGTTTTATGAAGGTGGTTTCCAAAGTTCTATGACCCGCCGAGAAGCTGCTCTCATTCT  363

Query  194  CGGTGTTAGGGAGAGTGTTGTGGCAGAGAAGGTGAAGGAAGCTCACCGGAGAGTGATGGT  253
             |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  364  TGGTGTTAGGGAGAGTGTTGTGGCAGATAAGGTGAAGGAAGCTCACCGGAGAGTGATGGT  423

Query  254  TGCAAACCACCCGGACGCTGGAGGCAGTCACTATCTGGCTTCTAAGATCAATGAAGCCAA  313
            |||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  424  TGCAAATCACCCAGACGCTGGAGGCAGTCACTATCTTGCTTCTAAGATCAATGAAGCCAA  483

Query  314  AGAGATGATGCTTGGAAAATCCAACAACACCGGGTCTGCCTTTTGATT-GTCATGTGTCT  372
            ||| ||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct  484  AGATATGATGCTTGGAAAATCCAACAACAGCGGTTCTGCCTTTTGATTTGTCATGTGTCT  543

Query  373  GATACGA  379
            |||||||
Sbjct  544  GATACGA  550



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17845050895


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5