BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939686
Length=721
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03080.1 | Symbols: | Phosphatidic acid phosphatase (PAP2) ... 1133 0.0
> AT5G03080.1 | Symbols: | Phosphatidic acid phosphatase (PAP2)
family protein | chr5:721867-723400 FORWARD LENGTH=1165
Length=1165
Score = 1133 bits (613), Expect = 0.0
Identities = 683/718 (95%), Gaps = 0/718 (0%)
Strand=Plus/Plus
Query 1 TTCCTTTGGATCTATCATCAATGGACCTCCTACCACAGCAGCTCAAGGCCGTAACTCTCA 60
|||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||| |
Sbjct 90 TTCCTTTGGATCTATCGTCAATGGACCTAATACCTCAGCAGCTCAAGGCCGTAACTCTTA 149
Query 61 CACACGTCCGGTACCGTCCCGGAGATCAGTTCGGACATTTCCTCGCCTGGATCTCTCTCG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 150 CACACGTCCGGTACCGTCCCGGAGATCAGCTCGGACATTTCCTCGCCTGGATCTCTCTCG 209
Query 121 TCCCTGTCTTCATCAGCCTCGGTGGATTCGTCTCTCATTTCCTTTTCCGGCGTGAGCTTC 180
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 TCCCAGTCTTCATTAGCCTCGGTGGATTCGTCTCTCATTTCCTTTTCCGGCGTGAGCTTC 269
Query 181 AAGGGATCTTCTTCGGTGTAGGTCTCGTGATCTCACAATTCATCAACGAGTTCATTAAAA 240
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 270 AAGGGATCTTCTTCGGTATAGGTCTCGTGATCTCACAATTCATCAACGAGTTTATCAAAA 329
Query 241 CATCTGTAGAACAAGCTCGTCCCGAGACTTGTACGTTGCTCGAAGCTTGCGATTCACATG 300
|||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 330 CATCTGTAGAGCAAGCGCGTCCCGAGACATGTACGTTGCTCGAAGCTTGCGATTCACATG 389
Query 301 GATGGCCATCAAGCCACTCGCAATTCATGTTCTTCTTCGCTACTTATTTCAGTTTGATGG 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 390 GATGGCCATCAAGCCACTCGCAATTCATGTTCTTCTTCGCTACGTATTTCAGTTTGATGG 449
Query 361 GATGCAAAGGAATTGGGTTCTGGTTTGGTTTAAGAAGTAGATGGATTATGAATCTTCTTC 420
|||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 450 GATGTAAAGGAATTGGATTCTGGTTTGGTTTAAGAAGCAGATGGATTATGAATCTTCTTC 509
Query 421 ATTGGTCTTTAGCTGTTGTTACCATGTATTCTAGGGTTTATTTAGGTTACCACACGGTGG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 510 ATTGGTCTTTAGCTGTTGTTACCATGTATTCTAGGGTTTATTTAGGTTACCACACGGTGG 569
Query 481 CGCAAGTTTTCGCCGGAGCGACGCTTGGGGCTGTTGTTGGTGGGAGTTGGTTCTGGGTGG 540
|||| ||||| || || ||| | ||||||| | ||||||||| |||||||||||||||||
Sbjct 570 CGCAGGTTTTTGCTGGTGCGGCTCTTGGGGGTATTGTTGGTGCGAGTTGGTTCTGGGTGG 629
Query 541 TTAATTCTGTGTTGTATCCATATTTTCCGGTGATTGAGGAGAGTGTATTGGGGAGATGGT 600
| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 630 TGAATTCTGTGTTGTATCCATTTTTTCCGGTGATTGAGGAGAGTGTATTGGGGAGATGGC 689
Query 601 TATATGTGAAGGATACTTCGCACATTCCTGATGTGTTGAAGTTTGAATATGACAATGCAA 660
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 690 TATATGTTAAGGATACTTCGCATATTCCTGATGTGTTGAAGTTTGAATATGACAATGCCA 749
Query 661 GAGCTGCTAGGAAGGATATGGACTCTGCTAAATCTGATTAATTTGGCTATTTTGATTT 718
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 750 GAGCTGCTAGGAAGGATATGGATTCTGCTAAATCTGATTAATTTGGCTAATTTGATTT 807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34962966312
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5