BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939687
Length=1288
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03100.1 | Symbols: | F-box/RNI-like superfamily protein | ... 1206 0.0
> AT5G03100.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:726822-728742 FORWARD LENGTH=1558
Length=1558
Score = 1206 bits (653), Expect = 0.0
Identities = 911/1033 (88%), Gaps = 28/1033 (3%)
Strand=Plus/Plus
Query 47 CGGTGTCGATTTCATCAGCTCTCTACCCGACGCGATCCTCCACCATATCTTCTCCTATAT 106
||||||||| |||||||||||||||||||||| ||||||||||||||| || || |||
Sbjct 28 CGGTGTCGACTTCATCAGCTCTCTACCCGACGAAATCCTCCACCATATCCTCGCCAATA- 86
Query 107 TA-CGACTAAGGTCGCCATCAGAACCTCCGTCTTGTCCAAACGATGGAAACATATCTGGT 165
| | || ||| |||| ||||||||||||||||| |||||||||||||| ||| | ||||
Sbjct 87 CACCTACCAAGCTCGCGATCAGAACCTCCGTCTTATCCAAACGATGGAAGCATGTATGGT 146
Query 166 ACGAGACACCGTCTCTCTCAATTGTTTGCTATAGAGTAGATCCCAATTCGATAAACAAAA 225
|||||||||| ||| |||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 147 ACGAGACACCTTCTATCTCAATTGTTTGCAATAGAGTAGATCCTGATTCGCTAAACAAAA 206
Query 226 CCCTACGTAGCTACTCGGCTCCCAAAATCACGAGTTTCGATGTTACCATGAGCA-ATGAC 284
||||| ||||||||||| |||||||||||| ||||||||||||||| || |||| | ||
Sbjct 207 CCCTAAGTAGCTACTCGACTCCCAAAATCAAGAGTTTCGATGTTACTATAAGCAGA-GAT 265
Query 285 GTCACTGCACCTGAGATCGATACGTGGATCAATCTCGCTGTTTCACGCAACGCTGAGGAT 344
||||| | ||||||||| ||||| ||||| ||||||||| | |||||||| |||||| ||
Sbjct 266 GTCACCGTACCTGAGATTGATACCTGGATTAATCTCGCTCTGTCACGCAAGGCTGAGAAT 325
Query 345 TTATCTCTCAAG-TTCAGATATAATTACAGATTCCCAGATACCTTCTTCATCAATTCCTC 403
|||||||| || |||| || | |||| ||||||| |||||| |||||||||||||||||
Sbjct 326 GTATCTCTC-AGATTCACATCTCATTATAGATTCCGAGATACATTCTTCATCAATTCCTC 384
Query 404 TCTGAAGCAGCTTAGTTTGAATTTGGGTTATTCCAATCTGATTCCCAAATGCGTTGTCTC 463
|||||||||||||||||||| ||||| ||||| || ||||| |||||| |||||||||||
Sbjct 385 TCTGAAGCAGCTTAGTTTGACTTTGGTTTATTGCATTCTGAATCCCAAGTGCGTTGTCTC 444
Query 464 TTGGTCATCGTTAAGGACCTTGTCGTTGAATCGTTGCAAGATGTCTGATGGCTCATTTGC 523
||||||||||||||||| |||||||||||||||||||||| ||||||||| ||| ||||
Sbjct 445 TTGGTCATCGTTAAGGAACTTGTCGTTGAATCGTTGCAAGGTGTCTGATGATTCAATTGC 504
Query 524 CAAAATTCTCTCTGGTTGTTTATTACTCGAAAGCTTGACATTGAATCTCTGTGATAGACT 583
|||||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 505 CAAAATTCTCACTGGTTGTTCATTGCTCGAAAGCTTGACATTGAATCTCTGTGATAGACT 564
Query 584 TTATCATCTTGATCTGAGCAAGTCACTAAGTCTGAGAAGATTGGAGGT-GTATGGAGACC 642
|| |||||||||||||||||||||||||| |||||||| ||||| | | ||||||||
Sbjct 565 CAATGATCTTGATCTGAGCAAGTCACTAAGTTTGAGAAGACTGGAGATACT-TGGAGACC 623
Query 643 GTTGGATTGAGGCACCAGCGAGGATTGTAGCGCCACACATCCATTATTTGAGATTGGAAA 702
||| | || |||||| ||||||||||||||||||||| | |||||||||||||||||
Sbjct 624 GTT-G---GA--CACCAGAGAGGATTGTAGCGCCACACATTCGTTATTTGAGATTGGAAA 677
Query 703 ACTATCAGCGACCATCCAATTTAGTGGATGTCTCCTCTTTAACAGAAGCTAATCTCAATC 762
|||||||||||||||| | ||||||||||||||| |||||||| |||||||||||| ||
Sbjct 678 ACTATCAGCGACCATCTACTTTAGTGGATGTCTCATCTTTAACCGAAGCTAATCTCGGTC 737
Query 763 TTTC---ATATGTACTTGACTATTTCACATGTGAAATCGTCGAGGCTGAATTGCTTCAGT 819
|||| | |||||||||||||||||||||||||||| | ||| |||||| |||||| |
Sbjct 738 TTTCAAAACATGTACTTGACTATTTCACATGTGAAAT-G--GAGACTGAATCGCTTCAAT 794
Query 820 TCATGGTGCGAGAGATTCTAGTAAAGTTGCAAAACGTAAAGAAGCTTACTATTGGGGGAA 879
|||||||||| ||| | || |||||||||||| ||||||||||||||||||||||||
Sbjct 795 ACATGGTGCGACAGACGGTGGTTAAGTTGCAAAACATAAAGAAGCTTACTATTGGGGGAA 854
Query 880 TTTTTCTTCAGATTCTATCTCTTGCCGAGCTCCGTGGTGTTACTTTTCCA-------A-A 931
|||||||||||||||||||||||||||||||| ||||||||||| ||||| | |
Sbjct 855 TTTTTCTTCAGATTCTATCTCTTGCCGAGCTCTGTGGTGTTACTCTTCCAGTCTTCCAGA 914
Query 932 ATTCAATATCGAAGCTTTGACTGTTGAAACGAGGATTGATCAGTCTATGATTCCTGGTCT 991
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 915 ATTCAATATCGAAGCTTTGACTGTTGAAACGAGGATTGATCAGTCTGTGATTCCTGGTCT 974
Query 992 AGCAAGGCTGCTACAAAACTCTCCTGGACTGAAACGGATAACAGTTTACATAATGAAATG 1051
|||||||||||||||||||||||||||||| ||| ||||||||||| |||||| ||| ||
Sbjct 975 AGCAAGGCTGCTACAAAACTCTCCTGGACTTAAAAGGATAACAGTTAACATAACGAAGTG 1034
Query 1052 CAACACCATACCG 1064
|||||||| ||||
Sbjct 1035 CAACACCACACCG 1047
Score = 174 bits (94), Expect = 2e-42
Identities = 98/100 (98%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 1097 TGCAAAGATGAAACATGTGGCTTCGTTCGTAAAACTTGTCATGGGAAACACAAAGACATT 1156
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1146 TGCAAAGATGAAACATGTGGATTCGTTCATAAAACTTGTCATGGGAAACACAAAGACATT 1205
Query 1157 AGAGAAGCTGGTTTTACAGTTTGGAGATTACCTTGATGCA 1196
||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 AGAGAAGCTGGTTTTACAGTTTGGAGATTACCTTGATGCA 1245
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63353087790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5