BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939693
Length=1496
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03160.1 | Symbols: ATP58IPK, P58IPK | homolog of mamallian ... 2512 0.0
> AT5G03160.1 | Symbols: ATP58IPK, P58IPK | homolog of mamallian
P58IPK | chr5:750109-752805 FORWARD LENGTH=1760
Length=1760
Score = 2512 bits (1360), Expect = 0.0
Identities = 1452/1497 (97%), Gaps = 3/1497 (0%)
Strand=Plus/Plus
Query 1 TGTATGTATATGTATTGAAAATCGAGAATGGATCTGTTCCGAGTTTGGTCAGGGATGGAT 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 152 TGTATGTATATGTATTG-AAATCGAGAATGGATCTGTTCCGAGTTTGGTCAGGGATGGAT 210
Query 61 TTCTTAGCTTGGAGAGGAATGGCTTACACTCTTCTTCTGCTTAACTTTGTCTTTGCTTGC 120
||||||||||||||||||||||||||||| |||||||| || ||||| ||||||||||||
Sbjct 211 TTCTTAGCTTGGAGAGGAATGGCTTACACACTTCTTCTTCTCAACTTCGTCTTTGCTTGC 270
Query 121 CAACTTCTTCTTCTCCAACCTCTCGTTTCCGCTTTAGATGGTCAATCGGTAGATGCTGCT 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 271 CAACTTCTTCTTCTCCAACCTCTCGTTTCCGCTCTAGATGGTCAATCGGTAGATGCTGCT 330
Query 181 GAGTTATTTGAGAGGGCTTCACAAAGTATCAAGGTTAAGCGTTTTAGTGATGCACTCGAT 240
|||||||| ||||| |||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 331 GAGTTATTCGAGAGAGCTTCACAAAGTATCAAGGTTAAGCGTTATAGTGATGCCCTCGAT 390
Query 241 GATCTGAATGCAGCCATAGAAGCAGACCCTGCACTTTCTGAAGCTTATTTTAAGCGTGCC 300
||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||
Sbjct 391 GATCTGAATGCAGCCATTGAAGCAGACCCTGCGCTTTCAGAAGCTTATTTTAAGCGTGCC 450
Query 301 TCTGTGCTTCGTCATTTTTGCAGATACCAAGACTCTGAGAATAATTACCAGAAATATCTG 360
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 451 TCTGTGCTTCGTCATTTTTGCAGATACGAAGACTCTGAGAATAGTTACCAGAAATATCTG 510
Query 361 GAATTTAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAG 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 GAATTCAAATCAGGAGATTCGAATGCTGAGAAAGAACTCTCTCAGCTTCATCAAGCTAAG 570
Query 421 AGTGCTTTGGAGACTGCCTCAACTCTGTACGAATCAAAGGACGTTGCGAAAGCTCTTGAA 480
|||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||
Sbjct 571 AGTGCTTTGGAGACTGCCTCGACTCTGTATGAATCAAAGGATATTGCGAAAGCTCTTGAA 630
Query 481 TTTGTTGATAAAGTTGTTCTTGTCTTCTCTCCGGCTTGCTCTAAGGCAAAGCTTCTCAAA 540
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 631 TTTGTTGATAAAGTTGTTCTTGTCTTCTCTCCAGCTTGCTCTAAGGCAAAGCTTCTCAAA 690
Query 541 GTCAAGCTCCTTATGGTGTCTAAAGACTACTCGGGTGCAATTTCCGAGACTGGTTATATT 600
|| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 691 GTGAAGCTCCTTATGGTGTCTAAAGACTACTCAGGTGCAATTTCTGAGACTGGTTATATT 750
Query 601 CTCAAGGAAGATGAAAATAACCTCGAGGCTTTGCTCCTTCGTGGACGTGCCTACTACTAT 660
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 751 CTCAAGGAAGATGAAAATAACCTCGAGGCGTTGCTCCTTCGTGGCCGTGCCTACTACTAT 810
Query 661 TTAGCAGATCATGATATTGCCCAAAGGCATTACCAAAAAGGGCTTCGTCTTGATCCGGAA 720
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 811 TTGGCGGATCATGATATCGCCCAAAGGCATTACCAAAAAGGGCTTCGTCTTGATCCGGAA 870
Query 721 CACAGTGAACTGAAGAAAGCATACTTCGGATTGAAAAAACTGCTCAAGAAAACAAAAAGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 CACAGTGAACTGAAGAAAGCATACTTCGGATTGAAAAAACTGCTCAAGAAAACAAAAAGC 930
Query 781 GCAGAAGATAATGCAAGCAAAGGAAAGTTGCGAGTTTCAGCAGAGGAATATAAAGAAGCT 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 931 GCAGAAGATAATGCAAACAAAGGAAAGTTGCGAGTTTCAGCAGAGGAATATAAAGAAGCT 990
Query 841 ATTGCTCTGGACCCTGAACACACGGCAAATAACGTTCATCTCTATCTTGGACTATGCAAG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 ATTGCTCTGGACCCTGAACACACGGCAAATAACGTTCATCTCTATCTTGGACTATGCAAG 1050
Query 901 GTCTCAGTCAGGCTCGGCCGTGGAAAAGACGGCTTAAATAGCTGTAATGAAGCA-TTAAA 959
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1051 GTCTCAGTCAGGCTCGGCCGTGGAAAAGACGGCTTAAATAGCTGTAATGAAGCACTTAA- 1109
Query 960 CATCGATGCAGAACTGATTGAAGCTTTACATCAGAGAGGAGAAGCTAAACTGTTGCTTGA 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1110 CATCGATGCAGAACTGATTGAAGCTTTACATCAGAGAGGAGAAGCTAAACTGTTGCTTGA 1169
Query 1020 AGATTGGGAAGGAGCTGTGGAGGATTTGAAGCAAGCCGCTCAAAACTCTCAGGACATGGA 1079
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1170 AGATTGGGAAGGAGCTGTGGAGGATTTAAAGCAAGCTGCTCAAAACTCTCAGGACATGGA 1229
Query 1080 AATTCATGAATCACTTGGTAGAGCAGAGAAGGCACTGAAGATGAGCAAACGAAAAGATTG 1139
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 1230 AATTCATGAATCACTTGGTAAAGCAGAGAAAGCACTGAAGATGAGCAAACGAAAAGATTG 1289
Query 1140 GTATAAGATTCTTGGAATTTCCAGAACCGCCTCTATCGCAGAAATCAAAAAAGCTTACAA 1199
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1290 GTATAAGATTCTTGGAATTTCCAGAACCGCCTCTATCTCAGAAATCAAAAAAGCTTACAA 1349
Query 1200 GAAGCTTGCTCTTCAATGGCATCCCGATAAAAACGTCGACAATAGAGAAGAAGCTGAGAA 1259
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1350 GAAGCTTGCTCTTCAATGGCATCCCGATAAAAACGTAGGCAATAGAGAAGAAGCTGAGAA 1409
Query 1260 CAAATTCCGAGAAATCGCTGCAGCTTATGAGGTTCTTGGAGATGATGATAAGCGGGCGAG 1319
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 1410 CAAATTCCGAGAAATCGCTGCAGCTTATGAGATTCTTGGAGATGACGATAAGCGGGCGAG 1469
Query 1320 ATTTGACAGAGGAGAGGATCTTGAAGATATGGGTGGAGGCGGCGGTGGAGGATTTAATCC 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1470 ATTTGACAGAGGAGAGGATCTTGAAGATATGGGTGGAGGCGGCGGTGGAGGATATAATCC 1529
Query 1380 GTTTCAtggtggtggtggtggtggACAACAATACACTTTCCATTTCGAGGGCGGTTTTCC 1439
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1530 GTTCCATGGTGGTGGTGGTGGTGGACAACAATACACTTTCCATTTCGAGGGTGGTTTTCC 1589
Query 1440 TGGTGGTGGTGGCGGTTTTGGCGGTTTCGGTTTCTAACTTGAACAACATGATGGAAT 1496
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1590 TGGTGGTGGTGGCGGTTTTGGTGGTTTCGGTTTCTAACTTGAACAACATGATGGAAT 1646
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73794801150
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5