BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939698

Length=280
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03204.1 | Symbols:  | unknown protein; Has 30201 Blast hits...   183    5e-46


> AT5G03204.1 | Symbols:  | unknown protein; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:762287-762397 
REVERSE LENGTH=111
Length=111

 Score =  183 bits (99),  Expect = 5e-46
 Identities = 107/111 (96%), Gaps = 0/111 (0%)
 Strand=Plus/Plus

Query  150  ATGGCGAGGATGATCGGACCATTCGAAACTGTACCGGCGATTCTTGTTTATCCGGTGAGG  209
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGGCTAGGATGATCGGACCATTCGAAACTGTACCGGCGATTCTTGTTTATCCGATGAGG  60

Query  210  GTTTCAGCTTCGCCATCGCTGGGGACAATTTATGAGGAAGACGATGAGTAA  260
            |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct  61   GTTTCAGCTTCGCCTTCGCTGGGGACAATTTATGAGGAACACGATGAGTAA  111



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12868543744


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5