BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939699

Length=238
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   279    6e-75


> AT5G03210.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: 11 plant 
structures; EXPRESSED DURING: 7 growth stages; Has 6 Blast 
hits to 6 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 6; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:762787-763321 REVERSE 
LENGTH=535
Length=535

 Score =  279 bits (151),  Expect = 6e-75
 Identities = 212/239 (89%), Gaps = 13/239 (5%)
 Strand=Plus/Plus

Query  2    AATATCGA-TAGAATCGAGA-ATGTGTTACTTTGACAACCGGTGCGATAAGAATCTGACG  59
            |||||| | | ||| ||| | ||||||| |||||| || ||||||||| |||||||||| 
Sbjct  45   AATATCTAGT-GAAGCGA-ATATGTGTTTCTTTGATAATCGGTGCGATCAGAATCTGAC-  101

Query  60   GTGGTGAAGGTGGATGTGGATGTGGCGTGGTGGATGGAGGCTGTTCCTCCACAGATAATA  119
              |||   ||| |  |||||||||||||||||||||||||||||||||||||| || || 
Sbjct  102  --GGT---GGT-G--GTGGATGTGGCGTGGTGGATGGAGGCTGTTCCTCCACAAATCATT  153

Query  120  TCTCCGGCGAAGCCATCGGTTTCTCCAATTCTTGAGACGATTTTAGAAGGCGGAGAGACC  179
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  154  TCTCCGGCGAAGCCATCGGTTTCTCCGATTCTTGAGACGATTTTAGAAGGCGGAGAGACC  213

Query  180  GAAGAAGACAATCACGAACAAGATAACGAAGACGTGTAAATTGTAATGATCGTTTTGTT  238
            |||||||||||||| |||||||| ||||| ||||||||||||||||||||| |||||||
Sbjct  214  GAAGAAGACAATCAAGAACAAGAAAACGAGGACGTGTAAATTGTAATGATCATTTTGTT  272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10757298286


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5