BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939701
Length=552
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03230.1 | Symbols: | Protein of unknown function, DUF584 |... 771 0.0
> AT5G03230.1 | Symbols: | Protein of unknown function, DUF584
| chr5:769514-770385 FORWARD LENGTH=872
Length=872
Score = 771 bits (417), Expect = 0.0
Identities = 506/548 (92%), Gaps = 10/548 (2%)
Strand=Plus/Plus
Query 6 ACGCTCTG-TTTTCATCAATGGCGTCAAGGAAGCttttttttGTCAAGCCTAAATACATA 64
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 105 ACGCTCTGTTTTTCATCAATGGCGTCAAGGAAGCTTTTTTTTGTCAAACCTAAATATATC 164
Query 65 TATCCAGAACCAGAACCAGAGATGTCCGATGAGAATGTCTTTGAATTCGACGAATCTGAT 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 TATCCAGAACCAAAACCAGAGATGTCCGATGAGAATGTCTTTGAATTCGACGAATCTGAT 224
Query 125 ATTCATAACTTAGGCGATCATCAATTGCCGAATTCATTCGACGCTAAGAGATCGATATCT 184
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 225 ATTCATAACTTAGGCGATCATCAATTGCCGAATTCATTCGACGCGAAAAGATCGATATCA 284
Query 185 ATCTCTCGATTAAGGAGAAAACCGGCGAAAACCGGAGATTCCGTCGGTTCTGGAAACCGG 244
|||||||| ||| ||||||||||| ||||||||||||||| | || | ||||||
Sbjct 285 ATCTCTCGGTTACGGAGAAAACCGACGAAAACCGGAGATT-C--AGG---T---AACCGG 335
Query 245 GAAATCACAAAGACCGGTTCGCTTCCGGTTAATATCCCCGACTGGTCTAAGATCTTGAAG 304
|| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 336 GAGATTACAAAGACCGGTTCGCTTCCGGTTAATATCCCCGATTGGTCTAAGATCTTGAAG 395
Query 305 AGTGAGTATAGAGGTCATGCGATACCTGACGACGACAGTGATGATGATGACGAGGAAGAT 364
|||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||
Sbjct 396 AGTGAGTATAGAGGTCATGCGATACCTGACGATGACAGTGACGACGATGACGAGGATGAT 455
Query 365 GACGATATCAACGACGGTGGAAGACGGATCATTCCGCCGCACGAGTATTTAGCGCGGCGG 424
||||||| |||||||||||| |||||||| |||||||||||||||||||| || | |||
Sbjct 456 GACGATAGCAACGACGGTGGGAGACGGATGATTCCGCCGCACGAGTATTTGGCAAGACGG 515
Query 425 AGAGGATCGTCGTTCACGGTGCATGAAGGAATCGGTGGAACGGCGAAAGGAAGAGATCTA 484
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 516 AGAGGATCGTCGTTCACGGTGCACGAAGGAATCGGTGGGACGGCGAAAGGAAGAGATCTA 575
Query 485 AGGCGATTGAGGAATGCTATTTGGGAGAAGATTGGGTTTCAAGATTAATAATATATTAAG 544
|||||||||||||| || ||||||||||||||||||||||| ||||| ||||||| ||||
Sbjct 576 AGGCGATTGAGGAACGCGATTTGGGAGAAGATTGGGTTTCAGGATTAGTAATATAATAAG 635
Query 545 TATGTAAT 552
||||||||
Sbjct 636 TATGTAAT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26473395469
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5