BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939710

Length=374
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03310.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   516    6e-146


> AT5G03310.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr5:799224-799706 REVERSE LENGTH=483
Length=483

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 352/385 (91%), Gaps = 13/385 (3%)
 Strand=Plus/Plus

Query  1    TTCTCATTCTCTCTCATAAACATGATGAAGAAGAGCAAGCTGATCACAAAGGCATGGAAG  60
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  41   TTCTCA-TCTCTCTCATAAACATGATGAAGAAGAGCAAGCTGATCGCAAAGGCATGGAAG  99

Query  61   CAAATGTCAAGCAGAGTTGCCAAACACCACGTCG---CC----A--CTAATGATCAATAT  111
            |||||||||||||||||||||||||||| |||||   ||    |  |||| |||||||||
Sbjct  100  CAAATGTCAAGCAGAGTTGCCAAACACCGCGTCGCCACCGGAAATCCTAAGGATCAATAT  159

Query  112  CATATACCACATGACGTACCAAAGGGGCACCTAGTGGTGTACGTTGGTAAAGAAGAGGAA  171
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct  160  CATATACCACATGACGTACCAAAGGGACACCTTGTGGTGTACGTTGGTAAAGATGAGGAA  219

Query  172  AGTTACAAGAGGTTCGTTATAAAGATCACGTTGCTTCACGATCCCCTCTTCAGGGCTTTG  231
            | ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  220  ACTTATAAGAGGTTCGTTATAAAGATCACGTTGCTTCACGATCCCATCTTCAGAGCTTTG  279

Query  232  CTTGATCAATCAAAAGATGAAGCTTATGACGATTTCACTTCCGGAGATTCCAAGCTTTGT  291
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  280  CTTGATCAATCAAAAGATGAAGCTTACGACGATTTCACTTCCGGAGATTCCAAGCTTTGT  339

Query  292  ATTCCCTGTGAAGAAAGTCTCTTCCTTGAGGTCATCCGTTGTGCTTCTCCTCGTTATTC-  350
            ||| | ||||| |||| |||||| || |||||| ||||||| ||||||||||||||||| 
Sbjct  340  ATTGCTTGTGACGAAACTCTCTTTCTCGAGGTCCTCCGTTGCGCTTCTCCTCGTTATTCG  399

Query  351  TTGATGAGTCTTTGAT-CACGAAGA  374
            || ||||||||||||| || |||||
Sbjct  400  TT-ATGAGTCTTTGATTCAAGAAGA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17593712150


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5