BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939712
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03320.1 | Symbols: | Protein kinase superfamily protein | ... 2093 0.0
AT3G09830.1 | Symbols: | Protein kinase superfamily protein | ... 924 0.0
> AT5G03320.1 | Symbols: | Protein kinase superfamily protein
| chr5:802027-804398 FORWARD LENGTH=1716
Length=1716
Score = 2093 bits (1133), Expect = 0.0
Identities = 1252/1310 (96%), Gaps = 6/1310 (0%)
Strand=Plus/Plus
Query 1 GGTGTTTTAATC-TCTTTAAGAAGATGAGATGCTTCTTATTTCCTCTTGGAGACAAGAAA 59
|||||||||| | |||||| |||||||| |||||||||||| |||||||| |||||||||
Sbjct 275 GGTGTTTTAA-CATCTTTACGAAGATGAAATGCTTCTTATTCCCTCTTGGGGACAAGAAA 333
Query 60 GATGAACAGAGAAGCCCTAAACCGGTTTCACCGACGTCTAACTTCAGTGATGTAAACAAA 119
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 334 GATGAACAGAGAAGCCCTAAACCGGTTTCACCAACGTCTAACTTCAGTGACGTAAACAAA 393
Query 120 AGCGGTTCAGATTTCAGTCCCCGGGATGTTTCTGGAACGAGCACGGTATCATCCACTGGT 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 394 AGCGGTTCAGATTTCAGTCCCCGGGATGTTTCTGGAACGAGCACAGTATCATCCACTGGT 453
Query 180 AGGAACTCCAACACTAGCATGTCAGCTAGAGAAAACAACCTTAGAGAGTTCACTATTGGT 239
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 AGGAACTCGAACACTAGCATGTCAGCTAGAGAAAACAACCTTAGAGAGTTCACTATTGGT 513
Query 240 GATCTTAAATCTGCCACAAGGAACTTCAGCAGGTCTGGTATGATTGGGGAAGGCGGTTTT 299
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 514 GATCTTAAATCTGCCACAAGGAACTTCAGCAGGTCAGGTATGATCGGGGAAGGCGGTTTT 573
Query 300 GGTTGTGTCTACTGGGGAACGATCAAGAACTTAGAAGACCCGTCGAAGAAAATCGAAGTC 359
|||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 574 GGTTGTGTCTTCTGGGGAACAATCAAGAACTTAGAAGACCCATCGAAGAAAATCGAAGTC 633
Query 360 GCGGTTAAACAGCTTGGCAAAAGAGGGTTGCAGGGTCATAAAGAATGGGTGACTGAAGTA 419
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 634 GCGGTTAAACAGCTCGGCAAAAGAGGGTTGCAGGGTCATAAAGAATGGGTGACTGAAGTG 693
Query 420 AACTTTCTCGGTGTAGTCGAGCATTCAAACTTGGTGAAATTGTTGGGACATTGTGCAGAA 479
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 694 AACTTTCTCGGTGTAGTCGAGCATTCAAACTTGGTGAAGTTGCTGGGACATTGTGCAGAA 753
Query 480 GACGATGAACGTGGAATCCAAAGGCTTTTGGTTTATGAATATATGCCAAACCAAAGCGTC 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 754 GACGATGAACGTGGAATCCAAAGGCTTTTGGTTTATGAATATATGCCAAACCAAAGTGTC 813
Query 540 GAGTTCCATTTATCCCCGCGGTCACCGACAGTACTTACTTGGGACCTCAGATTGAGAATA 599
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 GAGTTCCATTTATCTCCGCGGTCACCGACAGTACTTACTTGGGACCTCAGATTGAGAATA 873
Query 600 GCCCAAGACGCAGCTCGGGGTTTAACATACCTTCATGAAGAAATGGACTTTCAGATAATC 659
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 874 GCACAAGACGCAGCTCGAGGTTTAACATACCTTCATGAAGAAATGGACTTTCAGATAATA 933
Query 660 TTCCGTGATTTCAAGTCATCCAACATTCTATTAGGCGAGAATTGGAAAGCGAAGCTTTCA 719
|||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 934 TTCCGTGATTTCAAGTCATCCAACATTCTACTAGACGAGAATTGGACAGCGAAGCTTTCG 993
Query 720 GATTTCGGTCTGGCTCGCTTAGGTCCTTCACCAGGATCAAGTCATGTTTCTACTGATGTA 779
||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 994 GATTTCGGTTTGGCTCGCTTAGGTCCTTCACCAGGATCCAGCCATGTTTCTACTGATGTA 1053
Query 780 GTAGGAACAATGGGTTACGCAGCTCCAGAATACATCCAAACCGGTCGTCTCACATCGAAA 839
|||||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||||||
Sbjct 1054 GTAGGAACAATGGGATACGCAGCTCCAGAGTATATCCAAACGGGTCGCCTCACGTCGAAA 1113
Query 840 AGCGATGTGTGGGGTTACGGAGTTTTCATCTATGAGCTCATTACAGGAAGGAGACCACTA 899
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1114 AGCGATGTGTGGGGATACGGAGTTTTCATCTATGAGCTCATTACAGGAAGAAGGCCACTA 1173
Query 900 GACCGAAACAAGCCTAAAGGAGAGCAGAAGCTTCTAGAATGGGTGAGACCTTACTTATCC 959
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1174 GACCGGAACAAGCCTAAAGGAGAGCAGAAGCTTTTAGAATGGGTGAGACCTTACTTATCC 1233
Query 960 GACACAAGGAGGTTCCGTCTCATAGTAGACCCGAGGCTCGAGGGGAAGTACATGATCAAG 1019
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 1234 GACACAAGGAGGTTCCGGCTAATAGTAGACCCGAGGCTCGAGGGAAAGTACATGATCAAG 1293
Query 1020 CCAGTGCAGAAACTCGCGGTTGTGGCCAACCTCTGCCTTACTAGGAACGCAAAGGCGCGT 1079
|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1294 TCAGTGCAGAAACTCGCGGTTGTAGCCAACCTTTGCCTTACTAGAAACGCAAAGGCGCGT 1353
Query 1080 CCAAAGATGAGTGAGGTGTTAGAGATGGTGACAAAGATTGTGGAAGCTTCATCGCCTGGG 1139
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1354 CCAAAGATGAGCGAGGTGTTAGAGATGGTGACAAAGATTGTGGAAGCTTCATCGCCTGGG 1413
Query 1140 AATGGTGGCAAGAAACCGCAGCTGGTTCCGCTAAAGAGTCAAGAAGCTTCTAGAGTCGAG 1199
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1414 AATGGTGGCAAGAAGCCGCAGCTGGTTCCACTAAAGAGTCAAGAAACTTCTAGAGTCGAG 1473
Query 1200 GAAGGGAAGAATAAGAAGGTGCTTGATGGTGGC-GAAGGAGGTTGGTTAGAAAAGTTGTG 1258
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 1474 GAAGGGAAGAATAAGAAGGTTCTTGATGGTG-CTGAAGGAGGTTGGTTAGAAAAGTTGTG 1532
Query 1259 GAACCCAAAGAATGTGAGAGCTTGTTGATTCGGG--CTACGTCAGAAACA 1306
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1533 GAACCCAAAGAATGTGAGAGCTTGTTGATTCGGGGTCTACGTCAGAAACA 1582
> AT3G09830.1 | Symbols: | Protein kinase superfamily protein
| chr3:3016494-3018983 FORWARD LENGTH=1911
Length=1911
Score = 924 bits (500), Expect = 0.0
Identities = 976/1199 (81%), Gaps = 60/1199 (5%)
Strand=Plus/Plus
Query 112 TAAACAAAAGCGGTTCAGATTTC-AGTCCCCGGGATGTTTCTGGAACGAGCACGGTATCA 170
||||| |||||| ||||| ||| | | | || ||||| ||||| |||||||| | ||||
Sbjct 462 TAAACCGAAGCGGGTCAGAGTTCAACT-CTCGTGATGTCTCTGGGACGAGCACAGAATCA 520
Query 171 TCCACT-GGTA-G--GAACTCCAACACTAGC-ATGTC-AGCTAGAGAAAACAACCTTAGA 224
|||| | || | | |||||| || || | |||| | |||||| || || || |||
Sbjct 521 TCCA-TGGGGAGGAAGAACTCGTACCCT-CCGGTGTCTA-CTAGAGCAAGTAATCTCAGA 577
Query 225 GAGTTCA-CTATTGGTGATCTTAAATCTGCCACAAGGAACTTCAGCAGGTCTGGTATGAT 283
||||||| | ||| |||||| || ||||| |||| |||||| ||| | |||| ||||||
Sbjct 578 GAGTTCAGC-ATTACTGATCTCAAGTCTGCAACAAAGAACTTTAGCCGATCTGTTATGAT 636
Query 284 TGGGGAAGGCGGTTTTGGTTGTGTCTACTGGGGAACGA-TCAAGAACTTAGAAGACCCGT 342
||| ||||||||||| |||||||||| | |||| || | | | ||||||||| ||| |||
Sbjct 637 TGGAGAAGGCGGTTTCGGTTGTGTCTTCAGGGGCAC-AGTGAGGAACTTAGAGGACTCGT 695
Query 343 CGAAG--AAAATCGAAGTCGCGGTTAAACAGCTTGGCAAAAGAGGGTTGCAGGGTCATAA 400
| || |||||||||||||| || || ||||| || ||||||||||||||||| |||||
Sbjct 696 C--AGTTAAAATCGAAGTCGCAGTGAAGCAGCTCGGTAAAAGAGGGTTGCAGGGGCATAA 753
Query 401 AGAATGGGTGACTGAAGTAAACTTTCTCGGTGTAGTCGAGCATTCAAACTTGGTGAAATT 460
|||||||| || ||||| ||||| ||||| |||| |||||| ||||||||||||||||
Sbjct 754 GGAATGGGTTACGGAAGTGAACTTCCTCGGAATAGTTGAGCATACAAACTTGGTGAAATT 813
Query 461 G-TTGGGAC-ATTGTGCAGAAGACGATGAACGTGGAATCCAAAGGCTTTTGGTTTATGAA 518
| || || | ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 814 GCTT-GG-CTATTGTGCAGAAGATGATGAACGTGGAATCCAACGGCTTTTGGTTTATGAA 871
Query 519 TATATGCCAAACCAAAGCGTCGAGTTCCATTTATCCCCGCGGTCAC-CGACAGTACTTAC 577
|| ||||| |||| ||| || || ||||| |||||||| ||||||| | ||||| |||||
Sbjct 872 TACATGCCTAACCGAAGTGTTGAATTCCACTTATCCCCTCGGTCACTC-ACAGTTCTTAC 930
Query 578 TTGGGACCTCAGATTGAGAATAGCCCAAGACGCAGCTCGGGGTTTAACATACCTTCATGA 637
||||||||||||| ||||||| |||||||| |||||||| || ||||||||||| |||||
Sbjct 931 TTGGGACCTCAGACTGAGAATCGCCCAAGATGCAGCTCGCGGATTAACATACCTGCATGA 990
Query 638 AGAAATGGACTTTCAGATAATCTTCCGTGATTTCAAGTCATCCAACATTCTATTAGG-CG 696
||||||||| ||||||||||| ||||| ||||||||||| || |||||||| || || |
Sbjct 991 AGAAATGGAGTTTCAGATAATATTCCGCGATTTCAAGTCCTCGAACATTCT-TTTGGATG 1049
Query 697 AGAATTGGAAAGCGAAGCTTTCAGATTTCGGTCTGGCTCGCTTAGGTCCTTCACCAGGAT 756
|| | |||||||| ||||| |||||||||||| ||||||| |||||||| || |||||
Sbjct 1050 AGGACTGGAAAGCAAAGCTCTCAGATTTCGGTTTGGCTCGTTTAGGTCCATCTGAAGGAT 1109
Query 757 CAAGTCATGTTTCTACTGATGTAGTAGGAACAATGGGTTACGCAGCTCCAGAATACATCC 816
|| ||||||||||||||||| ||||| ||||||||||| ||||| || |||||||| |
Sbjct 1110 TAACCCATGTTTCTACTGATGTTGTAGGTACAATGGGTTATGCAGCACCTGAATACATTC 1169
Query 817 AAACCGGTCGTCTCACATCGAAAAGCGATGTGTGGGGTTACGGAGTTTTCATCTATGAGC 876
||||||| |||||||||||||||||||||||||||||||| ||||| ||| |||||||||
Sbjct 1170 AAACCGGCCGTCTCACATCGAAAAGCGATGTGTGGGGTTATGGAGTCTTCCTCTATGAGC 1229
Query 877 TCATTACAGGAAGGAGACCACTAGACCGAAACAAG-CCTAAAGGAGAGCAGAAGCTTCTA 935
| || || || ||| |||| | ||| ||||| || || || ||||||||||||||||||
Sbjct 1230 TTATCACTGGGAGGCGACCGGTGGACAGAAAC-AGACCCAAGGGAGAGCAGAAGCTTCTA 1288
Query 936 GAATGGGTGAGACCTTACTTATCCGACACAAGGAGGTTCC-GTCTCATAGTAGACCCGAG 994
||||||||||||||||| ||||| |||||||||| |||| | |||||| |||| || ||
Sbjct 1289 GAATGGGTGAGACCTTATTTATCTGACACAAGGAAGTTCAAG-CTCATATTAGATCCAAG 1347
Query 995 GCTCGAGGGGAAGTACATGATCAAGCCAGTGCAGAAA-CTCGCGGTTGTGGCCAACCTCT 1053
||| || ||||||||| |||||| | || || ||| || || |||||||||||| |
Sbjct 1348 GCTGGAAGGGAAGTACCCGATCAAATCGGTTCA-AAAGCTAGCAGTTGTGGCCAACAGAT 1406
Query 1054 GCCTTACT-AGGAACGCAAAGGCGCGTCCAAAGATGAGTGAGGTGTTAGAGATGGTGA-C 1111
| || | |||||| ||||||| ||||| |||||||||||||| ||||||||||||| |
Sbjct 1407 GT-TTGGTTAGGAACTCAAAGGCACGTCCCAAGATGAGTGAGGTTTTAGAGATGGTGAAC 1465
Query 1112 AAAGATTGTGGAAGCTTCATCGCCTGGGAATGGTGGCAAGAAACCGCAGCTGGTTCCGCT 1171
||| |||||||||||||| || || ||||| || | || ||||| ||||||||
Sbjct 1466 AAA-ATTGTGGAAGCTTCTTCA---GGAAATGG---CA-GC--CCACAGCTAGTTCCGCT 1515
Query 1172 -AA-AGAGTCAAGAAGCTTCTAGAGTCGAG-GAAGGGAAGAATAAGAAGGTGCTTGATGG 1228
|| || || || ||||||| |||| || | || || ||||| || |||| | |||
Sbjct 1516 GAACAGTGT-AA-AAGCTTCGAGAGACGCGAGA-GGAAAGAACAAT--GGTG---G-TGG 1566
Query 1229 TGGCGAAGGAGGTTGGTTAGAAAAGTTGTGGAACCCAAAGA-ATGTGAGAGCTTGTTGA 1286
|| |||||||||||||| | ||||| ||||| ||||||| | | ||||||||||||
Sbjct 1567 CGGTGAAGGAGGTTGGTTTGGCAAGTTATGGAATCCAAAGACAA-TAAGAGCTTGTTGA 1624
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5