BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939718
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03380.1 | Symbols: | Heavy metal transport/detoxification ... 1821 0.0
> AT5G03380.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:832104-834412 REVERSE LENGTH=1586
Length=1586
Score = 1821 bits (986), Expect = 0.0
Identities = 1139/1208 (94%), Gaps = 30/1208 (2%)
Strand=Plus/Plus
Query 12 CTACTACTTCCATGGGTGAGAAAAAGGAAGAAACGGCGACGAAACCTCAAGGAGAGAAGA 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 101 CTACTACTACGATGGGTGAGAAAAAGGAAGAAACGGCGACGAAACCTCAAGGAGAGAAGA 160
Query 72 AACCTGTCGATGGTGGTATCACCACCGTCGTTATGAAGCTTGATATGCATTGTGAAGGTT 131
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 AACCTACCGATGGTGGAATCACCACCGTCGTTATGAAGCTTGATATGCATTGTGAAGGTT 220
Query 132 GCGGCAAGAAAATCAAACGAATCTTCAAACATTTCAAAGGTGTGGAAGATGTGAAGATTG 191
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 221 GCGGCAAAAAAATCAAACGCATCTTCAAACATTTCAAAGGTGTGGAAGATGTGAAGATTG 280
Query 192 ATTATAAGAGTAACAAATTGACGGTGATCGGAAACGTAGATCCAGTGGAAGTTCGTGATA 251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 ATTATAAGAGTAACAAATTGACGGTGATCGGAAACGTAGATCCAGTGGAAGTTCGTGATA 340
Query 252 AAGTGGCCGAGAAAATTAAGAGACCAGTCGAACTCGTCTCTACAGTTGCGCCACCGAAGA 311
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 341 AAGTGGCCGACAAAATTAAGAGACCAGTCGAACTTGTCTCTACAGTAGCGCCGCCGAAGA 400
Query 312 AAGACACACCTCCTTCA---GGCGGTG-AGA-A-GAAGCCTCCTGCGGC-G-G-AGGAGA 362
|||| |||||||||||| ||||||| ||| | ||||||| || |||| | | ||||||
Sbjct 401 AAGAGACACCTCCTTCATCAGGCGGTGCAGAGAAGAAGCCTTCTCCGGCAGCGGAGGAGA 460
Query 363 AACCGGCTgagaaaaaaccagccgccgatgagaaatccggtgagaaaaaagaagagaaga 422
||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 461 AACCGGCTGAGAAGAAACCAGCCGCCGTTGAGAAACCCGGTGAGAAAAAAGAAGAGAAGA 520
Query 423 agaaagaggaaggagagaagaaagCTTCTCCTCCACCACCACCTAAAGAGAGTACTGTGG 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 AGAAAGAGGAAGGAGAGAAGAAAGCTTCTCCTCCACCACCACCTAAAGAGAGTACTGTGG 580
Query 483 TTTTGAAGACGAAGTTACATTGTGAAGGTTGCGAACACAAAATCAAAAGAATAGTCAACA 542
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 581 TTTTGAAGACCAAGTTACATTGTGAAGGTTGCGAACACAAAATCAAAAGAATAGTCAACA 640
Query 543 AAATTAAAGGGGTTAATTCAGTTGCTATTGATAGTGCCAAGGATTTGGTTATAGTTAAGG 602
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 641 AAATTAAAGGGGTTAATTCGGTTGCTATTGATAGTGCCAAGGATTTGGTTATAGTTAAGG 700
Query 603 GGATCATTGACGTGAAACAGCTCACTCCTTATCTTAACGAGAAGCTTAAACGCACGGTTG 662
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 701 GGATCATTGACGTGAAACAACTCACTCCTTATCTTAACGAGAAGCTTAAACGCACGGTGG 760
Query 663 AAGTTGTTCCGGCGAAAAAGGATGACGGAGCACCCGTGGCAGCGGCTGCAGCTGCAGCTC 722
||||||||||||| |||||||||||||||||||| |||||||| |||||| || ||||
Sbjct 761 AAGTTGTTCCGGCCAAAAAGGATGACGGAGCACCAGTGGCAGC---TGCAGCGGCGGCTC 817
Query 723 CAGCTGGCGGTGagaaaaaggacaaaggtgctggtgaaaagaaagagaacaaagatgttg 782
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 818 CAGCTGGCGGTGAGAAGAAGGACAAAGTTGCTGGTGAAAAGAAAGAGATTAAAGATGTTG 877
Query 783 gagaaaagaaagtcgacggtggtggtgagaagaagaaagaagTTGCTGTTGGCGG----- 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 GAGAAAAGAAAGTCGACGGTGGTGGTGAGAAGAAGAAAGAAGTTGCTGTTGGCGGCGGTG 937
Query 838 -AGGAGGAGG---AG----A-----CGGTGGTGCTATTGATGTGAAGAAATCGGAGTATA 884
||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct 938 GAGGAGGAGGTGGAGGTGGAGGAGACGGTGGTGCTATGGATGTGAAGAAATCGGAGTATA 997
Query 885 ACGGTTACGGTTATCCTCCACAGCCGATGTATTACTACCCACAAGGACAAGTATACGGTC 944
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 998 ACGGTTACGGTTATCCTCCACAGCCGATGTATTACTACCCAGAAGGACAAGTATACGGTC 1057
Query 945 AACAACATTACATGATGCAAGGTCAATCATCTCAATCGTATGTACAAGAACCGTATACAA 1004
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 1058 AACAACATTACATGATGCAAGGTCAATCATCGCAATCGTATGTACAAGAACCGTATTCGA 1117
Query 1005 ACCAAGGATACGTACAAGAATCGTATATGAACCAAGGTTACGGTCAAGGGTATGGACAAG 1064
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 ACCAAGGATACGTGCAAGAATCGTATATGAACCAAGGTTACGGTCAAGGGTATGGACAAG 1177
Query 1065 AAGCACCACCACCACCATATATGAACCACCAAGGTTACGCGGATCCTTATGGTCACATGC 1124
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1178 AAGCTCCACCACCACCATATATGAACCAACAAGGTTACGCAGATCCTTATGGTCACATGC 1237
Query 1125 GTGCGCCTGAGTTGTTTAGTGATGAGAATCCAAATGGGTGTTCTGTGATGTGAGTAAAAC 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1238 GTGCGCCTGAGTTGTTTAGTGATGAGAATCCAAATGGGTGTTCTGTGATGTGAGTAAAAC 1297
Query 1185 AAGTGGGG 1192
|| |||||
Sbjct 1298 AAATGGGG 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5