BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939719
Length=1174
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03390.1 | Symbols: | Protein of unknown function (DUF295) ... 1622 0.0
> AT5G03390.1 | Symbols: | Protein of unknown function (DUF295)
| chr5:834988-836751 FORWARD LENGTH=1536
Length=1536
Score = 1622 bits (878), Expect = 0.0
Identities = 1081/1177 (92%), Gaps = 21/1177 (2%)
Strand=Plus/Plus
Query 1 GTCTAGGGTTTTCAATTTT-AACAATGTCTCAGCTTTTGGGTCGAATCGCTAAGATCTCC 59
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 250 GTCTAGGGTTTTC-ATTTTCAACAATGTCTCAGCTTTTGGGTCGAACCGCTAAGATCTCC 308
Query 60 TCAGTTGTGAAGAAGCAGAGACTCTGTTTCAGTGAACTGCGGTCTTTCTCCACGGCGGCG 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 TCAGTTGTGAAGAAGCAGAGACTCTGTTTCAGTGAACTGCGGTCTTTCTCCACGGCGGCG 368
Query 120 ACGCCGTATCTGCTTTT-CTGTGAGACCAACTACAGGTTGGTGAGGACACCATTTGGTGG 178
||||||||||||||||| | || |||||||||| || | || | | ||||||
Sbjct 369 ACGCCGTATCTGCTTTTAAAG-GATACCAACTACA----GG-GCGG----CGTCTGGTGG 418
Query 179 AGCAGTGGTCGACATTAACCTGTACGATCCGAGGAAGAAGGAAACAGTGAAAGTCCCCGA 238
| |||||||||||||||||||||| ||||||||||||||||||| ||||||| | | |||
Sbjct 419 ATCAGTGGTCGACATTAACCTGTATGATCCGAGGAAGAAGGAAATAGTGAAAATTCGCGA 478
Query 239 CCAATATCTGTCCAAGGAGCTCCAATGTACGATGAAGATGGGATCTTCGAGGGGATGGGT 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 479 CCAATATCTGTCGGAGGAGCTCCAATGTACGATGAAGATGGGATCTTCGAGGGGATGGAT 538
Query 299 TGTTGCGAGAAAC-ATATTCGA-CTCCACATTGCGTCTCACCAATATCTTCAACCCTTGT 356
|||||||| | || |||| ||| | |||||||| |||||| |||||||||||||| |||
Sbjct 539 TGTTGCGA-AGACGATATACGAGC-CCACATTGTATCTCACTAATATCTTCAACCCGTGT 596
Query 357 GCCTCTGTTTCGTCTCACAAGGTTATCACTCTGCCTCCATTGGAGGATGATGCTAAAGCT 416
|||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||
Sbjct 597 GCCTCTGTTTCGTCACATAAGGTTTTCAATCTGCCTCCATTGGAGGATGATGCTAAAGCT 656
Query 417 CTTATCTCCACTATCTCTTTCTCAGCCTCCCCAGACCAGCAAGACTGTGTAGTGGCAGCC 476
| |||||||| ||||||| | |||||||| ||| ||||||||||||||||| |||||| |
Sbjct 657 CGTATCTCCAGTATCTCTCTATCAGCCTCTCCAAACCAGCAAGACTGTGTATTGGCAGTC 716
Query 477 AAGTCCTCTAGTAGTCCATTCCTCAGCCTGTGGCGGCCTGGTGACTCGGCTTGGACACGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 AAGTCCTCTAGTAGTCCATTCCTCAGCCTGTGGCGGCCTGGTGACTCGGCTTGGACACGC 776
Query 537 ATCAAGGTCCCGTTTCCTGCCTCCAAGGTGATAATGTATTCTGCGA-GAGACCGCAAGTT 595
|||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||
Sbjct 777 ATCAAGGTCCCGTTTCCTGCCTCCAATGTGATGATGTATTCTG-GAAGAGACCGCAAGTT 835
Query 596 CTATCTCCTCCCAAGGGAGAGTAAGGAAGAGTACGAGGGTCCCATTGATCTCATCAACAC 655
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 836 CTATCTCCTCCCCAGGGAGAGTAAGGAAGAGTGTGAGGGTCCCATTGATCTCATCAACAC 895
Query 656 TAGCTCCGACGACTTCCCTCAGGTGAGTCTGTACCAGGGATTCCCTAACTCTGACATCCC 715
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 896 TAGCTCCGACGACTTCCCTCAGGTGACTCTGTACCAGAGATTCCCTAACTCTGACATCCC 955
Query 716 CGTGAGTAGACAAGAACAGCTTGTCTCTACTATCAAGACTAAATATCTCGTCGAGTCACC 775
||||||||| |||||||||||| |||| | |||||||||| ||| || |||||||||||
Sbjct 956 CGTGAGTAGGCAAGAACAGCTTCTCTCAAGTATCAAGACTCGATACCTGGTCGAGTCACC 1015
Query 776 TTCTGGCGACTCCTTCATCGTTTACTGGTATAATGAGAGATCCTTATATTTGAAGGAAGG 835
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||
Sbjct 1016 TTCTGGCGACTCCTTCATCGTTTACTGGTGTAATGAGAGATCCTTCTATTGGAAGAAAGG 1075
Query 836 AAAAGTGGAGCCGTGGAACGGCAAGAACCCCCCTCCTAT-AAGGATCTCTTGCAGGAGTA 894
| ||||| ||||||||| ||| |||||||| |||||| | |||||||||||||||| ||
Sbjct 1076 AGAAGTGAAGCCGTGGACCGGAAAGAACCCTCCTCCT-TCAAGGATCTCTTGCAGGCTTA 1134
Query 895 AGACCAGAACCTTTGTGGTGTTTAGACAAGACCTTGAGCAAGGGTTCGGTTCATACACTG 954
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 1135 AGACCAGAACCTTTGTGGTTTTTAGACAAGACAGTGAGCAAGGAATCGGTTCATACACTG 1194
Query 955 AAGACATTGGCGATCTCTGCATTTTCCTAGGCCAAAGGGAGGCCTTTTGCTTCTCTGCAA 1014
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 1195 AAGACATTGGCGATCTCTGCATTTTCCTAGGCCATAGGGAGGCCTTTTGCGTCTCTGCAA 1254
Query 1015 CCGAATATCCCGGACTTCACCCTAATTCTGTCTACTATGCAAGCTCGGGCACTGGGTTTG 1074
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1255 CCGAATATCCCGGACTTCGCCCTAATTCTGTCTACTATGCAACCTCGGGCACGGGGTTTG 1314
Query 1075 GTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGCCCCTTTCTCGT 1134
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1315 GTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGGCCTTTTCTCGT 1374
Query 1135 GGCTTGCCCCTCTCCAGTGAATATAGCTTATTTGCTC 1171
|| ||||||| |||||||||||| |||||||||||||
Sbjct 1375 GGATTGCCCCACTCCAGTGAATAGAGCTTATTTGCTC 1411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57630225660
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5