BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939730

Length=223
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03220.1 | Symbols:  | Mediator complex, subunit Med7 | chr5...   228    2e-59


> AT5G03220.1 | Symbols:  | Mediator complex, subunit Med7 | chr5:767489-768857 
REVERSE LENGTH=736
Length=736

 Score =  228 bits (123),  Expect = 2e-59
 Identities = 137/144 (95%), Gaps = 0/144 (0%)
 Strand=Plus/Plus

Query  12   TAGAGAATAATGACTATAGCTACGTATCCGCCTCCTCCACCGTATTACAGACTCTACAAG  71
            ||| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct  93   TAGGGAATAATGGCTACAGCTACGTATCCGCCTCCTCCACCATATTACAGACTCTACAAG  152

Query  72   GATTACTCAGAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCCATTGAAGGCACCTAC  131
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  153  GATTACTCAGAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTAC  212

Query  132  GTTTGTTTCGGAGGCAACTATACT  155
            || ||||| |||||||||||||||
Sbjct  213  GTCTGTTTTGGAGGCAACTATACT  236



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10003282051


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5