BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939735
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03510.1 | Symbols: | C2H2-type zinc finger family protein ... 1441 0.0
> AT5G03510.1 | Symbols: | C2H2-type zinc finger family protein
| chr5:880225-881305 FORWARD LENGTH=1081
Length=1081
Score = 1441 bits (780), Expect = 0.0
Identities = 875/921 (95%), Gaps = 5/921 (1%)
Strand=Plus/Plus
Query 3 AATCAAAAAACGGAGGGATCATGACAAGTGTTCTTGAGGAGAGTGGAGACCACGCGCGTC 62
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 111 AAT-AAAAAACGGA-GGATCATGACAAGTGTTCTTGAGGAGAGTGGAGACCACGCGCGTC 168
Query 63 TTGTTCTCCTCATCAAGGGCAAACGCACCAAACGTCAGCGTTCTGCGTCTCCTCTTATGA 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTGTTCTCCTCATCAAGGGCAAACGCACCAAACGTCAGCGTTCTGCGTCTCCTCTTATGA 228
Query 123 TGAACGGAGCTGCAGTATCCAGCGTTTGTAGCGGTGAACGATCATCAGTAGAGGTAAAAG 182
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 229 TGAACGCTGCTGCAGTATCCAGCGTTTGTAGCGGTGAACGATCATCAGTGGAGGTAAGAG 288
Query 183 AAGAAGAAGCTGCTGGTGAAGTAGAATTCCGAGGAGCTACCGACGAAGATGAAGATATGG 242
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 289 AAGAAGAAGCTGCTGGTGAAGTAGAATTCCAAGGAGCTACCGATGAAGACGAAGATATGG 348
Query 243 CGAATTGTCTGATGTTGTTGTCGCAAGGACATCAAGCAAAGAGCAGT-AGCGATGATTTG 301
||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 349 CGAATTGTCTGATCTTGTTGTCGCAAGGACATCAAGCAAAGAGCAGCGA-CGATCATTTG 407
Query 302 TCGATGCAGAGAATGGGTTTCTCTAGCAACAAGAAACCGGTGGCTTCTCTAGGGTTAGGG 361
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 408 TCGATGCAGAGAATGGGTTTCTTTAGCAACAAGAAACCGGTGGCTTCTCTAGGGTTAGGG 467
Query 362 CTAGACGGTGTTTACCAATGCAAAACGTGTGATAAAAGCTTCCACTCGTTTCAAGCACTA 421
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 468 CTAGACGGTGTTTACCAGTGCAAAACGTGTGATAAAAGCTTCCATTCGTTCCAAGCGCTA 527
Query 422 GGAGGGCACAGGGCTAGCCACAAGAAGCCAAAACTTGGAGCTAGCGTTTTCAAATGCGAC 481
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 528 GGAGGGCACAGGGCTAGTCACAAGAAGCCAAAACTTGGAGCTAGCGTTTTCAAATGCGTC 587
Query 482 GAGAAGAAAACTGCGTCTGCGTCTATGATTGAAACTGTGGAAGTTGGAGCCGTAGGAAGC 541
||||||||||| ||||||||||||| | ||||||| ||||||| ||||||||||||||||
Sbjct 588 GAGAAGAAAACGGCGTCTGCGTCTACGGTTGAAACAGTGGAAGCTGGAGCCGTAGGAAGC 647
Query 542 TTTCTTTCTCTACAAGTAACTAGCAATGATGGTACCAAGAAACCGGAGAAAACACATGAA 601
|||||||| |||||||| ||||| | |||||||| |||||||||||||||||||||||||
Sbjct 648 TTTCTTTCCCTACAAGTGACTAGTAGTGATGGTAGCAAGAAACCGGAGAAAACACATGAA 707
Query 602 TGTTCAATCTGTAAGGCCGAGTTTTCTTCAGGACAAGCCTTAGGAGGTCATATGAGGAGA 661
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 708 TGTTCAATCTGCAAGGCCGAGTTTTCTTCAGGACAAGCCTTAGGAGGACATATGAGGAGA 767
Query 662 CATAGAGGTTTAACAATAAACGCAAACGCTAGTTCAACAATCAAAACAACAATATCATCA 721
||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||
Sbjct 768 CATAGAGGTTTAACAATAAACGCAAACGCTACTTCAGCAATCAAAACAGCGATATCATCA 827
Query 722 TCAAGTCATCATCACCATGAAGAATCTATACGGCCAAAGAACTTTCTCCAGTTAGATCTG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TCAAGTCATCATCACCATGAAGAATCTATACGGCCAAAGAACTTTCTCCAGTTAGATCTG 887
Query 782 AATCTTCCAGCACCAGAAGCTGAACGATGCTGCGAGAAACCAAAATTCGCATTTGCGTCC 841
|||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||| |||
Sbjct 888 AATCTTCCAGCACCCGAAGATGAACGATGCTGCGAGAAACCGAAATTCGCGTTTGCATCC 947
Query 842 AAAGATCAGATTCTTCTCTTCGCGGCAGCGTCCAATTCTTTGATTGATTGTCATCACTAA 901
||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 948 AAAGATCAGATTCTTCTCTTCACGGCCGCGTCAAATTCTTTGATTGATTGTCATCACTAA 1007
Query 902 TTAAGTAGTTCTT-GTAATTA 921
||||||||||||| |||||||
Sbjct 1008 TTAAGTAGTTCTTTGTAATTA 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5