BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939738
Length=1955
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03540.3 | Symbols: EXO70A1 | exocyst subunit exo70 family p... 2470 0.0
> AT5G03540.3 | Symbols: EXO70A1 | exocyst subunit exo70 family
protein A1 | chr5:889566-894167 FORWARD LENGTH=2286
Length=2286
Score = 2470 bits (1337), Expect = 0.0
Identities = 1430/1476 (97%), Gaps = 2/1476 (0%)
Strand=Plus/Plus
Query 480 TAAAGCCGTGGAGCCTGATCGCCTATTTGATGGCCTTCCCAACTCACTGAGACCATCCTC 539
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TAAAGCGGTGGAGCCTGATCGCCTATTTGATGGCCTTCCCAACTCACTGAGACCATCCTC 639
Query 540 AGACGGTGATGGAGGTGGAAAACCCCACGGAGGACATCACAACGATGACGCGGAAACTGC 599
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 640 AGACGGGGATGGAGGTGGAAAACCCCACGGAGGACATCACAATGATGACGCGGAAACTGC 699
Query 600 AGCTTATACACTTCCAATCCTCATTCCGTTAAGGGTATTGCCACTTTTGCATGACTTGGC 659
|||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||
Sbjct 700 TGCTTATACACTTCCAATCCTCATTCCGTCACGGGTGTTGCCACTTTTGCATGACTTGGC 759
Query 660 ACAGCAAATGGTTCAGGCTGGTCACCAACAACAGTTGCTACAAATTTATAGAGAAACACG 719
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 760 ACAGCAAATGGTTCAGGCTGGTCACCAACAACAGTTGCTACAAATTTATAGGGACACACG 819
Query 720 ATCTTTTGTCTTGGAAGAAAGCCTAAGGAAATTGGGAGTTGAAAAACTTAGCAAAGAGGA 779
|| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 820 TTCCTTTGTCTTGGAAGAAAGCTTAAAGAAATTGGGAGTTGAAAAACTTAGCAAAGAGGA 879
Query 780 TGTTCAGAGGATGCAGTGGGAAGTTTTGGAGGCCAAAATTGGAAATTGGATCCATTTCAT 839
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 TGTCCAGAGGATGCAGTGGGAAGTTTTGGAGGCCAAAATTGGAAATTGGATCCATTTCAT 939
Query 840 GCGCATTGCTGTTAAATTACTCTTTGCTGGAGAAAGGCAAGTATGTGACCAGATATTTCG 899
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 940 GCGCATTGCTGTTAAATTACTCTTTGCTGGAGAAAGACAAGTATGTGACCAGATATTCCG 999
Query 900 AGGTTTCGATTCTCTAAGTGATCAGTGTTTTGCAGAGGTTACAGTGAGCAGTGTCTCAAT 959
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1000 AGGCTTCGATTCTCTAAGTGATCAGTGTTTTGCAGAAGTTACAGTGAGCAGTGTCTCAAT 1059
Query 960 GCTACTTAGCTTTGGGGATGCTATAGCCAGGAGCAAGAGATCTCCAGAAAAGTTGTTTGT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1060 GCTACTTAGCTTTGGGGATGCTATAGCCAGGAGCAAGAGATCTCCAGAAAAGTTGTTTGT 1119
Query 1020 ACTCTTAGACATGTATGAGATAATGCGGGAGCTTCATACAGAGATTGAGACAATTTTCAA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 ACTCTTAGACATGTATGAGATAATGCGGGAGCTTCATACAGAGATTGAGACAATTTTCAA 1179
Query 1080 AGGTAAAGCATGCCTTGAAATTAGAGATTCTGCTACGGGCTTGACAAAGCGGTTGGCGCA 1139
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1180 AGGGAAAGCATGCCTCGAAATTAGAGATTCTGCGACGGGCTTGACAAAGCGGTTGGCGCA 1239
Query 1140 GACTGCTCAGGAAACATTTGGTGATTTCGAAGAAGCTGTTGAGAAAGATGCTACAAAGAC 1199
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1240 AACTGCTCAGGAAACATTTGGTGATTTTGAAGAAGCTGTTGAGAAAGATGCTACAAAGAC 1299
Query 1200 TGCTGTTCTAGATGGAACCGTCCACCCACTAACAAGCTATGTCATCAATTATGTGAAGTT 1259
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 1300 TGCTGTTCTAGATGGAACTGTCCACCCACTAACAAGCTATGTCATCAATTATGTCAAGTT 1359
Query 1260 CTTATTCGACTACCAAACGACATTGAAGCAACTTTTCTTGGAATTTGGAAATGGAGATGA 1319
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 TTTATTCGACTACCAAACAACATTGAAGCAACTTTTCTTGGAATTTGGAAATGGAGATGA 1419
Query 1320 CTCAAATTCGCAGCTAGCATCTGTAACAATGCGGATAATGCAGGCACTTCAAAACAACTT 1379
||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 1420 CTCAAATTCGCAGCTAGCATCCGTAACGATGCGGATAATGCAGGCGCTTCAAAACAACTT 1479
Query 1380 GGATGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAA 1439
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1480 GGACGGAAAATCGAAACAGTACAAAGATCCTGCATTGACACACTTGTTCCTGATGAACAA 1539
Query 1440 CATTCATTACATGGTCAGATCTGTGCGCAGGTCAGAAGCCAAGGATTTGCTAGGCGATGA 1499
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1540 CATTCATTACATGGTCAGATCTGTGCGCAGGTCAGAAGCCAAGGATTTGTTAGGCGATGA 1599
Query 1500 TTGGGTTCAAAGACATAGGCGTATCGTGCAGCAACATGCAAACCAATACAAAAGGGTTGC 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1600 TTGGGTTCAAAGACATAGGCGTATCGTGCAGCAACATGCAAACCAATACAAAAGAGTTGC 1659
Query 1560 CTGGACAAAGATATTACAATGCTCATCGGCGCAAGGTTTAACCTCATCTGGGGGAGGAAG 1619
||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1660 CTGGACAAAGATACTACAAAGCTCATCGGCGCAAGGTTTGACCTCATCTGGGGGAGGAAG 1719
Query 1620 TTTAGAGGGAGGAAACAGCAGTGGAGTTTCACGAGGATTATTGAAAGAGAGGTTCAAGAT 1679
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1720 TTTAGAGGGAGGAAACAGCAGTGGAGTTTCAAGAGGATTATTAAAAGAGAGGTTCAAGAT 1779
Query 1680 GTTCAATATGCAGTTTGATGAGTTGCATCAGAGACAATCTCAATGGACAGTTCCAGACAC 1739
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1780 GTTCAATATGCAGTTTGATGAGTTGCATCAGAGACAATCGCAATGGACAGTTCCAGACAC 1839
Query 1740 AGAGTTAAGAGAGTCACTAAGACTTGCTGTTGCCGAAGTATTATTGCCTGCTTACAGATC 1799
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1840 AGAGTTAAGAGAGTCACTAAGACTTGCTGTTGCTGAAGTATTATTGCCTGCTTATAGATC 1899
Query 1800 ATTCCTCAAACGCTTTGGGCCCTTGGTTGAGAGTGGGAAGAATCCTCAGAAATACATAAA 1859
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1900 ATTCCTCAAACGCTTTGGGCCTTTGGTTGAGAGTGGGAAGAATCCTCAGAAATACATAAA 1959
Query 1860 GTATACAGCTGAAGATCTTGAAAGATTGTTGGGTGAGTTGTTTGAAGGAAAGTCTATGAA 1919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960 GTATACAGCTGAAGATCTTGAAAGATTGTTGGGTGAGTTGTTTGAAGGAAAGTCTATGAA 2019
Query 1920 TGAACCACGCCGGTAAAGAAACAACCCCAAAAGATG 1955
||||||||||||||||| ||||||| ||||||||
Sbjct 2020 TGAACCACGCCGGTAAAAAAACAACT--AAAAGATG 2053
Score = 734 bits (397), Expect = 0.0
Identities = 457/485 (94%), Gaps = 7/485 (1%)
Strand=Plus/Plus
Query 1 TTTCTCCAGTTTTGGAATTTTGCCATGGCTGTTGATAGCAGAATGGATCTACTCAGCGAA 60
||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||
Sbjct 18 TTTCTCCAGTTTTGGAA-TTCGCCATGGCTGTTGATAGCAGAATGGATCTGCTAAGCGAA 76
Query 61 AGAGCTCTGTTGATGAGAGCTTCTCTTCAGAAGAGTCAAACCATCACCGATAATGTTGTC 120
|||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 77 AGAGCTGTGTTGATGAGAGCATCTCTTCAAAAGAGTCAAACCATCACCGATAATGTTGTT 136
Query 121 TCTATCCTCGGCTCTTTCGATAGTCGTCTCTCTGCTCTCGAAACCGCCATGCGTCCTACT 180
|||||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 137 TCTATCCTCGGCTCCTTCGATAGTCGTCTGTCTGCTCTTGAAACCGCCATGCGTCCTACT 196
Query 181 CAGATTAGAACTCATGCTATAAGGAAAGCTCATGAGAATATTGATAGGACTCTTAAGGCT 240
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 197 CAGATTAGGACTCATGCTATAAGGAAAGCTCATGAGAATATTGATAGGACTCTTAAGGCT 256
Query 241 GCTGAGGTTATTTTGTCTCAATTCGATCT-C-ACGT----CAGAGACTAAAGTACTCAAG 294
||||| ||||||||||||||||||||||| | ||| ||||||||||||||||||||
Sbjct 257 GCTGAAGTTATTTTGTCTCAATTCGATCTCCTCCGTCAGGCAGAGACTAAAGTACTCAAG 316
Query 295 GGGCCACATGAGGACCTGGAAAGTTATCTGGATGCAATTGCTCAACTCAGAAAGATTATT 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 317 GGGCCACATGAGGACCTGGAAAGTTATCTGGATGCAATTGCTCAACTCAGAAAGATTATT 376
Query 355 CGTTATTTTATGAGCAACAAAAGCTTAAAGAGTAGCGATGGAGTTCTCAACCATGCTAAT 414
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| || |||
Sbjct 377 CGTTATTTTATGAGCAACAAAAGCTTTAAGAGTAGTGATGGAGTTCTCAACCACGCAAAT 436
Query 415 AGCTTGCTTGCTAAAGCACAGTCAAAGCTAGAGGAGGAGTTTAAGCAGTTGCTTGCTTCT 474
|| |||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 437 AGTTTGCTTGCTAAAGCACAGTCAAAGCTGGAGGAAGAGTTTAAGCAGTTGCTAGCTTCT 496
Query 475 TACAG 479
|||||
Sbjct 497 TACAG 501
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96836851305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5