BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939759
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT5G03720.1 | Symbols: AT-HSFA3, HSFA3 | heat shock transcripti... 1921 0.0
AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcript... 115 1e-24
> AT5G03720.1 | Symbols: AT-HSFA3, HSFA3 | heat shock transcription
factor A3 | chr5:971786-973683 REVERSE LENGTH=1366
Length=1366
Score = 1921 bits (1040), Expect = 0.0
Identities = 1207/1281 (94%), Gaps = 38/1281 (3%)
Strand=Plus/Plus
Query 21 ATGAGCCCaaaaaaaGATGCTGTTTCTAAACCAACTCCAATCTCAGTACCCGTTTC--GA 78
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 1 ATGAGCCCAAAAAAAGATGCTGTTTCTAAACCAACTCCAATTTCAGTACCCGTTTCGAGA 60
Query 79 C---CCG----ACCCGGGTCTCTCTACGTCGACACTGACATGGGTTTCTCTGGGTCACCA 131
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGATCCGATATACCCGGGTCTCTCTACGTCGACACTGACATGGGTTTCTCTGGGTCACCA 120
Query 132 CTTCCCATGCCACTAGACATCTTACAAGGGAATCCAATTCCGCCTTTTTTATCCAAGACT 191
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTTCCCATGCCACTAGACATCTTACAAGGGAATCCAATTCCACCTTTTTTATCCAAGACT 180
Query 192 TTCGATTTGGTTGATGACCCGACTCTTGACCCGGTCATCTCTTGGGGACTCACTGGAGCT 251
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 181 TTTGATTTGGTTGATGACCCGACTCTTGACCCGGTCATCTCTTGGGGACTGACCGGAGCT 240
Query 252 AGCTTCGTTGTTTGGGATCCTCTAGAGTTCGCCAGAATCATACTTCCACGGAATTTCAAA 311
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 241 AGCTTCGTAGTTTGGGATCCTCTAGAGTTTGCCAGAATCATACTTCCAAGGAATTTCAAA 300
Query 312 CACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATGGATTTCGAAAGATTGAT 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATGGATTTCGAAAGATTGAT 360
Query 372 ACTGACAAGTGGGAATTTGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAG 431
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACTGACAAGTGGGAATTCGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAG 420
Query 432 AACATTCATCGTCGTCGATCACCACAATCCAACCAAACTTGCTGCAGTAGCACCAGCCAA 491
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 AACATTCATCGTCGTCGATCACCACAATCCAACCAAACTTGCTGCAGTAGCACTAGCCAA 480
Query 492 AGCCAAGGGTCACCTACTGAGGTTGGAGGAGAGATTGAGAAGCTGAGGAAAGAGCGGCGT 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 AGCCAAGGGTCACCTACTGAGGTTGGAGGAGAGATTGAGAAGCTGAGGAAAGAGCGGCGT 540
Query 552 GCGTTGATGGAGGAAATGGTTGAGCTTCAGCAGCAAAGCAGAGGCACAGCTCGACATGTG 611
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GCATTGATGGAGGAAATGGTTGAGCTTCAGCAGCAAAGCAGAGGCACAGCTCGACATGTG 600
Query 612 GACACTGTGAACCAGAGACTGAAAGCTGCAGAGCAACGTCAGAAGCAATTGCTCTCTTTC 671
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GACACTGTAAACCAGAGGCTGAAAGCTGCAGAGCAACGTCAGAAGCAATTGCTCTCTTTC 660
Query 672 TTGGCTAAGTTGTTTCAGAACCCGGGTTTCTTGGAACGCCTGAAGAACCTCAAAGGAAGA 731
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 661 TTGGCTAAGTTGTTTCAGAACCGGGGTTTCTTGGAACGCCTGAAGAACTTCAAAGGAAAA 720
Query 732 GAAAAAGGAGGAGCCCTTGGATTGGAAAAGGCGAGAAAGAAGTTCATCAAGCACCA---G 788
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 721 GAAAAAGGAGGAGCTCTTGGATTGGAAAAGGCGAGAAAGAAGTTCATCAAGCACCACCAG 780
Query 789 CAGCCTCAAGATTCTCCAACAGGAGGGGAGATGGTGAAGTATGAAGCTGATGATTGGGAG 848
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 781 CAGCCTCAAGATTCTCCAACAGGAGGGGAGGTGGTGAAGTATGAAGCTGATGATTGGGAG 840
Query 849 AGATTGCTAATGTATGACGAAGAGACTGAGACCACTCCACTCTCTAGCCACCAAGGGATG 908
||||||||||||||||||||||||||||||| ||| | | | ||| | ||||||
Sbjct 841 AGATTGCTAATGTATGACGAAGAGACTGAGAACAC-CAAGGGTTTAGG-A----GGGATG 894
Query 909 ACTTCAAGCGTAGGAGGAACCGATCTGAAAGGCAAGAACTTGATGAATCCATCCGAAGAA 968
|||||||||| | || | |||||||||||||||||| ||||||| ||||||
Sbjct 895 ACTTCAAGCG-AT------CC-A----AAAGGCAAGAACTTGATGTATCCATCAGAAGAA 942
Query 969 GAGATG-GTCAAACCAGATTACTTGATGTCCTTCCCATCTCCTGAAGGACTTATTAAACA 1027
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 GAGATGAG-CAAACCAGATTACTTGATGTCCTTCCCATCTCCTGAAGGACTTATTAAACA 1001
Query 1028 AGAAGAGACGACATGGAGTATGGGTTTCGATACTACAATACCGAGTTTCAGCAACACCGA 1087
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 AGAAGAGACGACATGGAGCATGGGTTTCGATACTACAATACCGAGTTTCAGCAACACCGA 1061
Query 1088 TGTATGGGGAAACACAATGGACTATAATGATGTCTCAGAGTTTGGTCATGTTGCAGAAAC 1147
|| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1062 TGCATGGGGAAACACAATGGACTATAATGATGTCTCAGAGTTTGGTTTTGCTGCAGAAAC 1121
Query 1148 AACAAGTGATGGTTTGCCTGATGTCTGCTGGGAACAATTTGCTGCAGGAATCACAGAGAC 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 AACAAGTGATGGTTTGCCTGATGTCTGCTGGGAACAATTTGCTGCAGGAATCACAGAGAC 1181
Query 1208 TGGATTCAACTGGCCAACTGGTGATGATGATAATAA---GCCAATGGATGATCCTTAAGA 1264
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||
Sbjct 1182 TGGATTCAACTGGCCAACTGGTGATGATGATGATAATACGCCAATGAATGATCCTTAGGA 1241
Query 1265 TCTTT-CATATA--GTTTAGA 1282
||||| |||||| |||||||
Sbjct 1242 TCTTTTCATATATAGTTTAGA 1262
> AT3G02990.1 | Symbols: ATHSFA1E, HSFA1E | heat shock transcription
factor A1E | chr3:673472-676403 FORWARD LENGTH=1864
Length=1864
Score = 115 bits (62), Expect = 1e-24
Identities = 143/179 (80%), Gaps = 18/179 (10%)
Strand=Plus/Plus
Query 252 AGCTTCGTTGTTTGGGATCCT--CTAGAGTTCGCCAGAATCA--TACTTCCACGGAATTT 307
|||||||| |||| ||| | | || |||||||||| || || | || ||| | ||||
Sbjct 287 AGCTTCGTGGTTT-GGAACGTGCCT-GAGTTCGCCA-AA-CAGTTTCTACCAAAGTATTT 342
Query 308 CAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATGGATTTCGAAA-GA 366
||| |||||||||||||||||||||||||||||||| || |||||||| ||| |||| |
Sbjct 343 CAAGCACAACAATTTCTCCAGCTTCGTCAGACAGCTCAATACTTATGGTTTTAGAAAAG- 401
Query 367 TTGATACTGACAAG-TGGGAATTTGCTAACGAGG-CTTTCCTTA-GAGGC-AAGAAGCA 421
||||| | ||| | ||||| ||||| ||||||| |||| ||| ||||| || |||||
Sbjct 402 TTGATCCAGACC-GCTGGGAGTTTGCAAACGAGGGCTTT--TTAAGAGGCCAA-AAGCA 456
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5