BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939794

Length=268
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04030.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   291    3e-78


> AT5G04030.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: endomembrane system; EXPRESSED IN: egg cell; 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:1088462-1088692 REVERSE LENGTH=231
Length=231

 Score =  291 bits (157),  Expect = 3e-78
 Identities = 208/232 (90%), Gaps = 5/232 (2%)
 Strand=Plus/Plus

Query  21   ATGGCGCCTCGTATAAACCAGGTAAGGTTTATTCTTATCCTCATGGTTGTCGCTTCCGTG  80
            ||||||| |||||| ||||| ||||||||| ||||||||||||| || || |||| ||||
Sbjct  1    ATGGCGCTTCGTATGAACCATGTAAGGTTTCTTCTTATCCTCATTGTGGTTGCTTTCGTG  60

Query  81   GCCGGAGGAAA-TTTTCCGGTGAAGCAAGATTCAGCAAAGAGAGATACAATTTGGGAAGA  139
            |||||| |||| |||| ||||||||||||||||||||||| |||||  ||||||||||||
Sbjct  61   GCCGGA-GAAAGTTTTACGGTGAAGCAAGATTCAGCAAAGGGAGATGTAATTTGGGAAGA  119

Query  140  AGTATTTCACGAGGATTATGGTTCTTGGAGCCCGACTCCAAAAATTAGAAGAGGTAGTCC  199
            ||||||||||| ||||||||||||||||||||||||||||||||||  |||| |||||||
Sbjct  120  AGTATTTCACGGGGATTATGGTTCTTGGAGCCCGACTCCAAAAATTCCAAGACGTAGTCC  179

Query  200  AGCACCTATTCCTCATGAT--TTTA-CACCACCACGTAGCTTAAAAGCGTAA  248
            |||||||||||||||||||  |||  ||||||||||||| || |||||||||
Sbjct  180  AGCACCTATTCCTCATGATGATTTTGCACCACCACGTAGGTTGAAAGCGTAA  231



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12265330756


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5