BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939798

Length=335
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04045.1 | Symbols:  | Putative membrane lipoprotein | chr5:...   433    6e-121


> AT5G04045.1 | Symbols:  | Putative membrane lipoprotein | chr5:1093679-1094230 
FORWARD LENGTH=463
Length=463

 Score =  433 bits (234),  Expect = 6e-121
 Identities = 304/337 (90%), Gaps = 7/337 (2%)
 Strand=Plus/Plus

Query  1    TTAGTAAGCAACAAATTAAAATGGAAAAAGTAACAAGCATTTTCGTCGTTCTTCTCCTAA  60
            ||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||
Sbjct  15   TTAGTAAGCAACAAATTAAAATGGAAAAAGTTACAAGCATTTTCTTTGTTCTTCTCCTAA  74

Query  61   TTTCTTCATGTCTAATTCTGAGGAGTGAAGGTCAGTTTCGATGTAAGAGTGCTGCGGATT  120
            ||||||||||||| ||| |||||||| ||||||| |||||||||||||||| |||||| |
Sbjct  75   TTTCTTCATGTCTGATTTTGAGGAGTCAAGGTCAATTTCGATGTAAGAGTGTTGCGGAAT  134

Query  121  GTGATACTCGTGGTTGCAGAGTAGGGACACATGTAATATGTAAT-A-CAGGGCACAAATG  178
            ||||| ||||||||||||||||||| |||||||||||||| ||| | ||   |||| |||
Sbjct  135  GTGATTCTCGTGGTTGCAGAGTAGGAACACATGTAATATGCAATGAACAC--CACATATG  192

Query  179  TACATGTGCTCAAGGTTCTCCTATTGGTGGTCAGTGTAATACAGTCGAAGACTGTGACAG  238
            |||||||||||| |||||||| ||||||||||||||| ||  ||||||||||||||||  
Sbjct  193  TACATGTGCTCATGGTTCTCCCATTGGTGGTCAGTGTGATGGAGTCGAAGACTGTGACCT  252

Query  239  TTCTGGTTGTCCACCAAACTCTCATGTTATATGCGATACAATTAGAGGAAACTTCTGCAC  298
            |||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct  253  TTCTGGCTGTCCACCAAACTCTCATGTTATATGCGATAGAATTGGAGGAAACTTCTGCAC  312

Query  299  TTGTGTTCCCAATTGAATATTTAAAGGGTCTCTAATG  335
            |||||| ||||||||| | || ||| |||||||||||
Sbjct  313  TTGTGTCCCCAATTGA-T-TT-AAATGGTCTCTAATG  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15633269939


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5