BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg939798 Length=335 Score E Sequences producing significant alignments: (Bits) Value AT5G04045.1 | Symbols: | Putative membrane lipoprotein | chr5:... 433 6e-121 > AT5G04045.1 | Symbols: | Putative membrane lipoprotein | chr5:1093679-1094230 FORWARD LENGTH=463 Length=463 Score = 433 bits (234), Expect = 6e-121 Identities = 304/337 (90%), Gaps = 7/337 (2%) Strand=Plus/Plus Query 1 TTAGTAAGCAACAAATTAAAATGGAAAAAGTAACAAGCATTTTCGTCGTTCTTCTCCTAA 60 ||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||| Sbjct 15 TTAGTAAGCAACAAATTAAAATGGAAAAAGTTACAAGCATTTTCTTTGTTCTTCTCCTAA 74 Query 61 TTTCTTCATGTCTAATTCTGAGGAGTGAAGGTCAGTTTCGATGTAAGAGTGCTGCGGATT 120 ||||||||||||| ||| |||||||| ||||||| |||||||||||||||| |||||| | Sbjct 75 TTTCTTCATGTCTGATTTTGAGGAGTCAAGGTCAATTTCGATGTAAGAGTGTTGCGGAAT 134 Query 121 GTGATACTCGTGGTTGCAGAGTAGGGACACATGTAATATGTAAT-A-CAGGGCACAAATG 178 ||||| ||||||||||||||||||| |||||||||||||| ||| | || |||| ||| Sbjct 135 GTGATTCTCGTGGTTGCAGAGTAGGAACACATGTAATATGCAATGAACAC--CACATATG 192 Query 179 TACATGTGCTCAAGGTTCTCCTATTGGTGGTCAGTGTAATACAGTCGAAGACTGTGACAG 238 |||||||||||| |||||||| ||||||||||||||| || |||||||||||||||| Sbjct 193 TACATGTGCTCATGGTTCTCCCATTGGTGGTCAGTGTGATGGAGTCGAAGACTGTGACCT 252 Query 239 TTCTGGTTGTCCACCAAACTCTCATGTTATATGCGATACAATTAGAGGAAACTTCTGCAC 298 |||||| ||||||||||||||||||||||||||||||| |||| |||||||||||||||| Sbjct 253 TTCTGGCTGTCCACCAAACTCTCATGTTATATGCGATAGAATTGGAGGAAACTTCTGCAC 312 Query 299 TTGTGTTCCCAATTGAATATTTAAAGGGTCTCTAATG 335 |||||| ||||||||| | || ||| ||||||||||| Sbjct 313 TTGTGTCCCCAATTGA-T-TT-AAATGGTCTCTAATG 346 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 15633269939 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5