BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939799

Length=326
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04045.1 | Symbols:  | Putative membrane lipoprotein | chr5:...   361    3e-99


> AT5G04045.1 | Symbols:  | Putative membrane lipoprotein | chr5:1093679-1094230 
FORWARD LENGTH=463
Length=463

 Score =  361 bits (195),  Expect = 3e-99
 Identities = 291/335 (87%), Gaps = 15/335 (4%)
 Strand=Plus/Plus

Query  1    TTAGTAAGCAACAAATTAAAATGGAAAAAGTAACAAACATTTTCTTCGTTCTTCTCCTAA  60
            ||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||
Sbjct  15   TTAGTAAGCAACAAATTAAAATGGAAAAAGTTACAAGCATTTTCTTTGTTCTTCTCCTAA  74

Query  61   TTTCTTCATGTCTGATTTTGAGAAGTGAAGGT-AA-----ATGTAAGAGTGTTGCGGAAT  114
            |||||||||||||||||||||| ||| ||||| ||     ||||||||||||||||||||
Sbjct  75   TTTCTTCATGTCTGATTTTGAGGAGTCAAGGTCAATTTCGATGTAAGAGTGTTGCGGAAT  134

Query  115  GTGATCCTCGTCGTTGCAGAATGGGG-CAGCATATAATATGTAGT-ACACAGCACGA-AT  171
            ||||| ||||| |||||||| | ||  || ||| ||||||| | | | ||| ||| | ||
Sbjct  135  GTGATTCTCGTGGTTGCAGAGTAGGAACA-CATGTAATATGCAATGA-ACACCAC-ATAT  191

Query  172  GTACATGTGCTCATGGCTCTCCTATTGGTGGTCAGTGTGATAGACTCGGAGACTGTGACC  231
            |||||||||||||||| ||||| |||||||||||||||||| || ||| |||||||||||
Sbjct  192  GTACATGTGCTCATGGTTCTCCCATTGGTGGTCAGTGTGATGGAGTCGAAGACTGTGACC  251

Query  232  TTTCTGGTTGTCCACCAACCTCTCATGTTATCTGCGATTTAATTCGAAG---CGTCTGCA  288
            ||||||| |||||||||| |||||||||||| ||||||  |||| || |   | ||||||
Sbjct  252  TTTCTGGCTGTCCACCAAACTCTCATGTTATATGCGATAGAATTGGAGGAAACTTCTGCA  311

Query  289  CTTGTATCCCCAATTGATTAAAATGGTCTCTAATG  323
            ||||| ||||||||||||| |||||||||||||||
Sbjct  312  CTTGTGTCCCCAATTGATTTAAATGGTCTCTAATG  346



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15180860198


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5