BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939803

Length=457
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03390.1 | Symbols:  | Protein of unknown function (DUF295) ...   532    8e-151


> AT5G03390.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr5:834988-836751 FORWARD LENGTH=1536
Length=1536

 Score =  532 bits (288),  Expect = 8e-151
 Identities = 344/371 (93%), Gaps = 4/371 (1%)
 Strand=Plus/Plus

Query  86    GTGTAATGAGAGATCCTTATATTTGAAGAAAGGAGAAGTGGAA-CCGTGGAACGGCAAGA  144
             |||||||||||||||||| |||| ||||||||||||||| ||| ||||||| ||| ||||
Sbjct  1043  GTGTAATGAGAGATCCTTCTATTGGAAGAAAGGAGAAGT-GAAGCCGTGGACCGGAAAGA  1101

Query  145   ACCCCCCTCCTAT-AAGGATCTCTTGCAGGAGTAAGACCAGAACCTTTGTGGTGTTTAGA  203
             |||| |||||| | ||||||||||||||||  ||||||||||||||||||||| ||||||
Sbjct  1102  ACCCTCCTCCT-TCAAGGATCTCTTGCAGGCTTAAGACCAGAACCTTTGTGGTTTTTAGA  1160

Query  204   CAAGACCTTGAGCAAGGGATCGGTTCATACACTGAAGACATTGGCGATCTCTGCATTTTC  263
             ||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct  1161  CAAGACAGTGAGCAAGGAATCGGTTCATACACTGAAGACATTGGCGATCTCTGCATTTTC  1220

Query  264   CTAGGCCAAAGGGAGGCCTTTTGCGTCTCTGCAACCGAATATCCCGGACTTCACCCTAAT  323
             |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  1221  CTAGGCCATAGGGAGGCCTTTTGCGTCTCTGCAACCGAATATCCCGGACTTCGCCCTAAT  1280

Query  324   TCTGTCTACTATGCAAGCTCGGGCATTGGGTTTGGTTACTACGACCTCTCCTCCAACACT  383
             |||||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||
Sbjct  1281  TCTGTCTACTATGCAACCTCGGGCACGGGGTTTGGTTACTACGACCTCTCCTCCAACACT  1340

Query  384   CTCCACGACGTTATCCATGAGGCCCCTTTCTCGTGGCTTGTCCCTCTCCAGTAAATATAG  443
             |||||||||||||||||||||| || |||||||||| ||| ||| ||||||| |||| ||
Sbjct  1341  CTCCACGACGTTATCCATGAGGGCCTTTTCTCGTGGATTGCCCCACTCCAGTGAATAGAG  1400

Query  444   CTTATTTGCTC  454
             |||||||||||
Sbjct  1401  CTTATTTGCTC  1411



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21765935317


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5