BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939804

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G03390.1 | Symbols:  | Protein of unknown function (DUF295) ...   475    2e-133
  AT5G04060.1 | Symbols:  | S-adenosyl-L-methionine-dependent met...   255    2e-67 


> AT5G03390.1 | Symbols:  | Protein of unknown function (DUF295) 
| chr5:834988-836751 FORWARD LENGTH=1536
Length=1536

 Score =  475 bits (257),  Expect = 2e-133
 Identities = 298/318 (94%), Gaps = 2/318 (1%)
 Strand=Plus/Plus

Query  41    GGAGAAGTGGAGCCGTGGAACGGCAAGAACCCCCCTCCTAT-AAGGATCTCTTGCAGGAG  99
             ||||||||| ||||||||| ||| |||||||| |||||| | ||||||||||||||||  
Sbjct  1074  GGAGAAGTGAAGCCGTGGACCGGAAAGAACCCTCCTCCT-TCAAGGATCTCTTGCAGGCT  1132

Query  100   TAAGACCAGAACCTTTGTGGTGTTTAGACAAGACCTTGAGCAAGGGATCGGTTCATACAC  159
             ||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||||||||
Sbjct  1133  TAAGACCAGAACCTTTGTGGTTTTTAGACAAGACAGTGAGCAAGGAATCGGTTCATACAC  1192

Query  160   TGAAGACATTGGCGATCTCTGCATTTTCCTAGGCCAAAGGGAGGCCTTTTGCGTCTCTGC  219
             |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct  1193  TGAAGACATTGGCGATCTCTGCATTTTCCTAGGCCATAGGGAGGCCTTTTGCGTCTCTGC  1252

Query  220   AACCGAATATCCCGGACTTCACCCTAATTCTGTCTACTATGCAAGCTCGGGCACTGGGTT  279
             |||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct  1253  AACCGAATATCCCGGACTTCGCCCTAATTCTGTCTACTATGCAACCTCGGGCACGGGGTT  1312

Query  280   TGGTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGCCCCTTTCTC  339
             |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1313  TGGTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGGCCTTTTCTC  1372

Query  340   GTGGCTTGCCCCTCTCCA  357
             |||| ||||||| |||||
Sbjct  1373  GTGGATTGCCCCACTCCA  1390


> AT5G04060.1 | Symbols:  | S-adenosyl-L-methionine-dependent methyltransferases 
superfamily protein | chr5:1099118-1102058 
FORWARD LENGTH=2204
Length=2204

 Score =  255 bits (138),  Expect = 2e-67
 Identities = 158/167 (95%), Gaps = 4/167 (2%)
 Strand=Plus/Plus

Query  358   AGACGAGGAATCAATCATCTCAAGAGTCCGAGACTTGGCTCCTAAGTTCCTTTGGGAAGT  417
             |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  1815  AGACGAGGAATCAATCGTCTCAAGAGTCCGAGACTTGGCTCCTAAGTTCCTTTGGGAAGT  1874

Query  418   TGAAACACATGAGCTTCAAGACAAATACAAGAAGACAGAAACTGTTCTATTTTGCAGAAA  477
             |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1875  TGAAGCACATGAGCTTCAAGACAAATACAAGAAGACAGAAACTGTTCTATTTTGCAGAAA  1934

Query  478   GATATTTTGGGCAATCGTTTGAAAA--TCTACTTGTGTAGAAATTCT  522
             || ||||||||||||| ||||||||  || ||  |||||||||||||
Sbjct  1935  GAAATTTTGGGCAATCCTTTGAAAAAGTCCAC--GTGTAGAAATTCT  1979



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24966371059


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5