BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg939806

Length=239
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G04080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   364    2e-100


> AT5G04080.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: plasma membrane; EXPRESSED IN: 16 plant structures; 
EXPRESSED DURING: 9 growth stages; Has 115 Blast hits 
to 115 proteins in 16 species: Archae - 0; Bacteria - 0; 
Metazoa - 0; Fungi - 5; Plants - 110; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:1104705-1105388 FORWARD 
LENGTH=504
Length=504

 Score =  364 bits (197),  Expect = 2e-100
 Identities = 211/217 (97%), Gaps = 3/217 (1%)
 Strand=Plus/Plus

Query  4    TCCATACTTTTGAGAAGATGCAGGACATGAGAGATCAAACTCCTCCTCAAGGATATCCAG  63
            ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct  94   TCCATACTTTTGAGAAGATGCAGGACATGAGAGATCAAAATCCTCCACAAGGATATCCAG  153

Query  64   CTGCAGAACAAGTATCGGAACAGCCTGGACAGGAGGACAAGAAGAAGAAGAAACCACGGT  123
            |||||||||||||||| ||||||||||||||  | |||||||||||||||||||||||||
Sbjct  154  CTGCAGAACAAGTATCTGAACAGCCTGGACA--A-GACAAGAAGAAGAAGAAACCACGGT  210

Query  124  TTTTCGAGACAAAGCAGAAAGGAGACAGAGGCTTCATTGAAGGATGTCTCTTTGCACTAT  183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  211  TTTTCGAGACAAAGCAGAAAGGAGACAGAGGCTTCATTGAAGGATGTCTCTTTGCACTAT  270

Query  184  GCTGCTGCTGGATTTGTGAAATGTGTTTCTAAGGAAA  220
            |||||||||||||||||||||||||||||||||||||
Sbjct  271  GCTGCTGCTGGATTTGTGAAATGTGTTTCTAAGGAAA  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10807566035


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5