BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939809
Length=759
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04120.1 | Symbols: | Phosphoglycerate mutase family protei... 1127 0.0
> AT5G04120.1 | Symbols: | Phosphoglycerate mutase family protein
| chr5:1120003-1121775 FORWARD LENGTH=975
Length=975
Score = 1127 bits (610), Expect = 0.0
Identities = 713/761 (94%), Gaps = 13/761 (2%)
Strand=Plus/Plus
Query 2 CAATACCCCTTCCAATAACATGGGTCATGAATGGATCAATGCAGAGAAGGAGTTCAAATG 61
||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct 70 CAATACCCCTTCCGATAACATGGGTCATGAATGGATCGATGCAGAGAGGGAGTTCAAATG 129
Query 62 GGGCGAGGATGTCAAAGTTGAGAGTGAAGTGACTGAGATTGTTCTTGTTCGCCATGGAGA 121
| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 130 GAGCGAGGATGTCAAAGTTGAAAGTGAAGTGACTGAGATCGTTCTTGTTCGCCATGGAGA 189
Query 122 AACCACTTGGAATGCTGCCGGAAGAATCCAGGGACAAATTGAATCAGATCTTAACGAGGT 181
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 190 AACCACTTGGAATGCTGCCGGAAGAATCCAGGGACAAATTGAATCAGACCTTAACGAGGT 249
Query 182 TGGACAAAAGCAGGCTGTTGCAATCGCTGAGAGATTGGGAAAAGAGGAAAGACCCGTAGC 241
||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 250 TGGACTAAAGCAGGCTGTTGCAATCGCTGAGAGGTTGGGAAAAGAGGAAAGACCTGTAGC 309
Query 242 TGTGTATTCATCAGACCTCAAACGAGCCAAAGACACTGCT-TTGATGATCGCCAAAACTT 300
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 310 TGTGTATTCATCAGACCTCAAACGAGCCAAAGACACTGCTCTT-ATGATCGCCAAAACTT 368
Query 301 GTTTTTGTCCCGAGGTGATTGAAGTACCTGACTTGAAGGAGAGGCACGTGGGTAGTCTCC 360
|||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 369 GTTTCTGTCCCGAGGTGATCGAAGTACCTGACTTAAAGGAGAGGCACGTGGGTAGTCTCC 428
Query 361 AAGGGCTGTATTGGAAAGAAGGAGCAGAGAAAGAACCTGAAGCTTACGCTGCCTTTTTCT 420
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 429 AAGGCCTGTATTGGAAAGAAGGAGCAGAGAAAGAACCTGAAGCTTACTCTGCCTTTTTCT 488
Query 421 CTTCCCAAGATGACCTTGAGATTCCGGGAGGAGGAGAGAGCTTTGACCAACTTTG-TGAT 479
|||||||| | ||||| |||||||||||||||||||||||||||||||||||| | ||||
Sbjct 489 CTTCCCAAAACGACCTCGAGATTCCGGGAGGAGGAGAGAGCTTTGACCAACTT-GCTGAT 547
Query 480 AGATCCATGAATGCTCTTGAGCAAATTGCAAAGAAGCACAAAGGAGAGAGAGTGATAGTG 539
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 548 AGATCCATGGATGCTCTTGAGCAAATTGCTAAGAAGCACAAAGGAGAGAGAGTGATAGTG 607
Query 540 GTGACTCATGGAGGAGTGTTGAGGGCAATTTACTTGAGGATCACACAAGCTTCCTCTGCA 599
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 608 GTGACTCATGGAGGAGTGTTGAGGGCAATTTACTTAAGGATCACACAAGCTTCCTCTGCC 667
Query 600 GGAAAACTACTA-AATGCTTCAGTGAATGTTGTTCACCGCCGTGA-CGAGAAATGGATCA 657
|||||||| || ||||||||||||||||| ||||| | |||||| | | ||||||||||
Sbjct 668 GGAAAACT-CTTGAATGCTTCAGTGAATGTGGTTCATCTCCGTGATCAA-AAATGGATCA 725
Query 658 TTGATTCGTGGAGCGATGTTTCACATCTCTCTTCCGTTGGATTTCTCCAACGTGGCTTTG 717
| ||||||||||||||||| |||||||| || |||||||||||||| |||||||||||||
Sbjct 726 TCGATTCGTGGAGCGATGTATCACATCTATCATCCGTTGGATTTCTTCAACGTGGCTTTG 785
Query 718 ATGGAGATGCCAAAGCC-TAGGGAGGAGCCTCATCATTCAT 757
||||||| ||||| ||| ||| || | |||| ||||||||
Sbjct 786 ATGGAGACGCCAA-GCCCTAGAGA--A-CCTCCTCATTCAT 822
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36871863898
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5