BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939814
Length=1129
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04170.1 | Symbols: | Calcium-binding EF-hand family protei... 1583 0.0
AT3G10300.3 | Symbols: | Calcium-binding EF-hand family protei... 619 2e-176
> AT5G04170.1 | Symbols: | Calcium-binding EF-hand family protein
| chr5:1145431-1147781 FORWARD LENGTH=1475
Length=1475
Score = 1583 bits (857), Expect = 0.0
Identities = 1051/1138 (92%), Gaps = 40/1138 (4%)
Strand=Plus/Plus
Query 1 ATTGTCAAAACGTTTCATCGATGTCAGGTTACCCTCCGACGAGCCAAGGTTACGGTTACG 60
|||||||| | |||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 129 ATTGTCAAGTCATTTCATCGATGTCAGGATATCCTCCGACTAGCCAAGGTTACGGTTACG 188
Query 61 GTTACGGCGGCGGAAATCAACCTCCACCACCTCAACCACCTTACTCCTCCGGCGGTAACA 120
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 189 GTTACGGCGGCGGTAATCAACCTCCACCACCTCAACCACCTTACTCTTCCGGCGGAAACA 248
Query 121 ATCCTCCTTACGGATCAT---CAACCTCTTCTCCTTACGCTGTACCCTACGGCGGACCTA 177
||||||| |||||||||| ||||||||||||||||||||||||||||||||| | |||
Sbjct 249 ATCCTCCCTACGGATCATCAACAACCTCTTCTCCTTACGCTGTACCCTACGGCGCATCTA 308
Query 178 AACCAC---CGTCATCCTCTCCCACGCCGCCGTACGGATCTTCAAAGCCTCAATCTTCAT 234
|||||| | ||||||||| | | ||||| || | | | | ||||||||
Sbjct 309 AACCACAATCATCATCCTCT-TC-TG-CGCCG-AC-G----T---A--C-GGATCTTCAT 353
Query 235 CATACGGAGCACCGCCTCCTTCAGCTCCATACGCGCCTTCTCCAGGCGACTACAACAAGC 294
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 354 CATACGGAGCACCGCCTCCTTCAGCTCCGTACGCGCCTTCTCCAGGAGACTACAACAAGC 413
Query 295 CGCCAAAGGAGAAACCTTACGGAGGCTACGGAGCTTCCGGCGATTACGGAGCTCCACCGC 354
|||||||||||||||| ||| || | ||| ||| |||||||||||||| |
Sbjct 414 CGCCAAAGGAGAAACCATAC---GG--A-GGA------GGC---TACGGAGCTCCACCAC 458
Query 355 CGCCTGGACCTTCAGATTACGGGAGTTACGGTGCTGGACCTCGTCCGACGCCGTCGTCTG 414
|| ||||| ||||||||||||| |||||||||||||||||||||||| ||| | ||||||
Sbjct 459 CGTCTGGATCTTCAGATTACGGAAGTTACGGTGCTGGACCTCGTCCGTCGCAGCCGTCTG 518
Query 415 GGTACAGTGGAGGATACGGAGCTACTCCGCCGTC-TGGGATTTCTGAATATGGGAGTTAC 473
|| || |||||||||||||||||||||| ||| | |||| ||||||| ||||| ||||||
Sbjct 519 GGCACGGTGGAGGATACGGAGCTACTCCACCG-CATGGGGTTTCTGACTATGGAAGTTAC 577
Query 474 GGTGGTGCTCCGCCTCGTCCAGCGTCTTCTGGTCAGGGCGGCGGATACGGAGGTTATCCT 533
||||||||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 578 GGTGGTGCTCCACCTCGTCCAGCGTCTTCTGGTCACGGTGGCGGATACGGAGGTTATCCT 637
Query 534 CCGCAAGCTTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGGTTTTGCTCCGGGA 593
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 638 CCGCAAGCCTCTTATGGAAGTCCTTTTGCTTCTCTGATTCCGTCAGGTTTTGCTCCGGGG 697
Query 594 ACGGATCCGAATATAGTGGCTTGCTTTCAGGCTGCAGATCAAGATGGTAGTGGCTTTATT 653
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 ACAGATCCGAATATAGTGGCTTGCTTTCAGGCTGCAGATCAAGATGGTAGTGGCTTTATT 757
Query 654 GATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAACAGAGATTCAGTATGAGAACT 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 GATGATAAGGAGCTTCAAGGAGCTCTCTCTTCTTATCAACAGAGATTCAGTATGAGAACT 817
Query 714 GTTCATCTTCTTATGTATCTGTTCACCAATAGCAATGCCATGAAAATCGGACCTAAGGAG 773
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 818 GTTCATCTTCTTATGTATCTATTCACCAATAGCAATGCTATGAAAATCGGACCTAAGGAG 877
Query 774 TTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAG 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 878 TTTACTGCACTTTTCTACAGTCTTCAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAG 937
Query 834 GACAGGAGTGGCAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTT 893
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 938 GACAGGAGTGGAAGAATAGATGTGAATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTT 997
Query 894 TCGGTTTCTCCTGTGATTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAG 953
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TCGGTTTCTCCTGTGGTTTTGGATCTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAG 1057
Query 954 AACAGGGCCATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGGGCCTGACA 1013
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1058 AACAGGGCTATCGAATATGACAATTTCATTGAGTGCTGTCTCACTGTTAAGGGGCTGACA 1117
Query 1014 GAGAAGTTCAAGGAGAAGGACACAGCGTACTCAGGCTCAGCTACTTTCAACTACGAAAGC 1073
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1118 GAGAAGTTCAAGGAGAAGGACACAGCATACTCAGGCTCAGCTACTTTCAACTACGAAAGC 1177
Query 1074 TTCATGCTCACCGTCCTCCCCTTCCTCATCGCATAAGTTTTTA--ACGGTAACCCGTT 1129
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1178 TTCATGCTCACCGTCCTCCCCTTCCTCATCGCATAAGTTTTTTTTACGGTAACCCGTT 1235
> AT3G10300.3 | Symbols: | Calcium-binding EF-hand family protein
| chr3:3186314-3188205 FORWARD LENGTH=1264
Length=1264
Score = 619 bits (335), Expect = 2e-176
Identities = 520/610 (85%), Gaps = 10/610 (2%)
Strand=Plus/Plus
Query 501 TCTGGTCAGGGCGGCGGATACGGAGGTTATCCTCCGCAAGCTTCTTATGGAAGTCCTTTT 560
||||| || || || || ||||||| | ||||||||||||||||||||||||||| |||
Sbjct 522 TCTGGACATGGAGGAGGTTACGGAGCTCCTCCTCCGCAAGCTTCTTATGGAAGTCCGTTT 581
Query 561 GCTTCTCTGATTCCGTCAGG-TTTTGCTCCGGGAACGGATCCGAATATAGTGGCTTGCTT 619
|| |||||| ||||||| || ||| |||| ||||| |||||||| || |||||||| ||
Sbjct 582 GCGTCTCTGGTTCCGTC-GGCGTTTCCTCCCGGAACAGATCCGAACATTGTGGCTTG-TT 639
Query 620 T-CAGGCTGCAGATCAAGATGGTAGTGGCTTTATTGATGATAAGGAGCTTCAAGGAGCTC 678
| || ||||| |||| || |||||| || || |||||||||||||||||||||||||
Sbjct 640 TCCAAGCTGCGGATCGGGACAATAGTGGATTCATCGATGATAAGGAGCTTCAAGGAGCTC 699
Query 679 TCTCTTCTTATCAA-CAGAGATTCAGTATGAGAACTGTTCATCTTCTTATGTATCTGTTC 737
| ||||| ||| || ||||| ||||| || |||||||||||||| ||||||||||| |||
Sbjct 700 TATCTTCGTAT-AATCAGAGCTTCAGCATAAGAACTGTTCATCTCCTTATGTATCTATTC 758
Query 738 ACCAATAGCAATGCCATGAAAATCGGACCTAAGGAGTTTACTGCACTTTTCTACAGTCTT 797
||||| ||||||| || ||| || ||||| || ||||||||| ||||||||| ||||||
Sbjct 759 ACCAACAGCAATGTCAGGAAGATTGGACCAAAAGAGTTTACTTCACTTTTCTTTAGTCTT 818
Query 798 CAGAACTGGAGGTCCATTTTTGAGAGGTCTGATAAGGACAGGAGTGGCAGAATAGATGTG 857
||||| |||||||| || |||||||||| |||||||||||| || || |||||||||
Sbjct 819 CAGAATTGGAGGTCTATCTTTGAGAGGTTTGATAAGGACAGAAGCGGTAGAATAGATACA 878
Query 858 AATGAGCTGAGAGATGCGCTTTTGAGCCTTGGGTTTTCGGTTTCTCCTGTGATTTTGGAT 917
|| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||
Sbjct 879 AACGAGCTGAGAGATGCACTCATGAGCCTTGGGTTTTCTGTTTCTCCTGTGATTTTGGAT 938
Query 918 CTGCTGGTTTCCAAGTTTGACAAAAGCGGAGGCAAGAACAGGGCCATCGAATATGACAAT 977
||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 939 CTGCTGGTTTCAAAGTTTGACAAAAGCGGAGGCAGGAACAGGGCTATCGAATATGACAAT 998
Query 978 TTCATTGAGTGCTGTCTCACTGTTAAGGGCCTGACAGAGAAGTTCAAGGAGAAGGACACA 1037
||||| ||||| ||| | ||||| ||||| || || |||||||||||||||||||| ||
Sbjct 999 TTCATCGAGTGTTGTTTGACTGTAAAGGGGCTCACCGAGAAGTTCAAGGAGAAGGATACG 1058
Query 1038 GCGT-ACTCAGGCTCAGCTACTTTCAACTACGA-AAGCTTCATGCTCACCGTCCTCCCCT 1095
|||| | ||||||||||||| |||||| ||||| || |||||||||||| || | || |
Sbjct 1059 GCGTTA-TCAGGCTCAGCTATTTTCAATTACGAGAA-CTTCATGCTCACTGTTTTACCAT 1116
Query 1096 TCCTCATCGC 1105
||||| ||||
Sbjct 1117 TCCTCGTCGC 1126
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55371201135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5