BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg939816
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G04190.1 | Symbols: PKS4 | phytochrome kinase substrate 4 | ... 1652 0.0
> AT5G04190.1 | Symbols: PKS4 | phytochrome kinase substrate 4
| chr5:1150892-1152481 FORWARD LENGTH=1590
Length=1590
Score = 1652 bits (894), Expect = 0.0
Identities = 1048/1120 (94%), Gaps = 20/1120 (2%)
Strand=Plus/Plus
Query 1 AAGAACCAAAAGATACTTCAATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCG 60
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 203 AAGAAGCAAAAGATACTTCAATGGCGCAAACTACTGTCACTGTAGTCGCGACCAAACGCG 262
Query 61 ATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGGTCAAACGACATCGATGTTTCCT 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 263 ATGCTCTTGATCCTTACATCAAGATTCTTCAGAATCGATCAAACGACATCGATGTCTCCT 322
Query 121 TCTCTTCGTACCTCAAGCCAGACAACAACGGACAACAACAAAAGGAGAATGACGATACTG 180
||||||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 323 TCTCTTCTTACCTCAAACCAGACAACAACGAACAACAACAAAAGGAGAATGAAGATACTG 382
Query 181 AGCTAAGCATCTTCGAAGCTCGAAGTTACTTTAGCGAAAATGGAAGCAACGAT-G--GAT 237
||||||| |||||||||||||||||||||||||||||||| |||||||||||| | |||
Sbjct 383 AGCTAAGTATCTTCGAAGCTCGAAGTTACTTTAGCGAAAACGGAAGCAACGATAGTCGAT 442
Query 238 GCCAGATGAGGAATCTAAGTGGTCCAAGATTCTCATCTGTTTCATCTGCAAAAGTGTCTT 297
|||||| |||||||||||||||||||||||| || || || ||||||||||||||||||
Sbjct 443 GCCAGACGAGGAATCTAAGTGGTCCAAGATTTTCTTCGGTCGCATCTGCAAAAGTGTCTT 502
Query 298 CTTTTACCGTGGGACAAACGGCATCGTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGC 357
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 503 CTTTTACCGTGGGACAAACGGCATCCTCTGAAGCTAGCTGGAACAGCCAAACCGGTTTGC 562
Query 358 TCTCTAACAAAAGCCGCCAAGGATCGGCCCGAGATGGACGTAGAAGCAGCAAGAAAGGAC 417
|||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 563 TCTCTAACAAAAACCGCCAAGGATCGGACAGAGATGGACGTAGAAGCAGCAAGAAAGGAC 622
Query 418 CCAGATGGTTTTTTAGACGCAGGACTTGTCCCTGTTCTAGCTCTAAGTCGGTTCAGGTCC 477
| ||||||||||||||||||||| ||||||| ||||||||||| ||||| ||||||||||
Sbjct 623 CAAGATGGTTTTTTAGACGCAGGGCTTGTCCATGTTCTAGCTCCAAGTCCGTTCAGGTCC 682
Query 478 AAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAGTCGTGTCGAACC 537
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 683 AAGAATCCAAACCAAGAATCGCAGTGCCCAAAACCGGTTCTGACCGAATCGTCTCGAACC 742
Query 538 GAATCGTTCATAGTCATCAGACGATATCTTCGCCTGAGCCAATAAGATTAACAATCCCTT 597
|||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 743 GAATAGTTCATAGTCATCAGACGATATCTTCACCTGAGCCAATAAGATTAACGATCCCTT 802
Query 598 CAAACACTGTGACTCGGTCCGTAGATTACGCAGCAAACAGAGAAGCTAGAGCTCCGGTTA 657
|||||||||||||||||||| | |||||| | ||||||| ||||||||||||||| ||||
Sbjct 803 CAAACACTGTGACTCGGTCCATCGATTACACTGCAAACAAAGAAGCTAGAGCTCCAGTTA 862
Query 658 GTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATCATCAGAAAATCCCAAGAATC 717
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 863 GTAATTTTAGCTTCCCAACTCTAAACGAAACTTCACAATTATCAGAAAATCCCAAGAATC 922
Query 718 CGGTTTTGG-T--T------C-G--A--A-TTGAACCGGTTCTGCTTCCGATTAAACCGG 762
|||||||| | | | | | | ||||||||| ||||||||||||||||||||
Sbjct 923 CGGTTTTGAATCATATTAAACCGGTACGAATTGAACCGGCTCTGCTTCCGATTAAACCGG 982
Query 763 TTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACGAGCGACGCTA 822
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 983 TTCTGAATCCTACGAGTCCCAAGGGAGTCATCATAGACGAAGAAGCCACAAGCGACGCAA 1042
Query 823 GCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAA-CCTGCAGCTCGTCCATGGGCT 881
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1043 GCTCCGATCTTTTTGAGATAGAGAGCTTCTCTACTCAAACC-GCAGCTCGTCCATGGGCT 1101
Query 882 CCACCAGTACGGGTCTCGATAGACGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAA 941
||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1102 CCACCAGTACGGGACTCGATGGAAGAGACCGTGTCTGAGTACGGTTACGAGCCAAGCGAA 1161
Query 942 GCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCCGCGGTTGCAGCTAACTTC 1001
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1162 GCAAGTGTTACTTGGAGCGTTATGACCGCCGAGCCGGCCTCGGCCGTTGCAGCTAACTTC 1221
Query 1002 TCAAGAATCGCCTTGTCGTCCTCGTCGACGGCGTTTAGTGGTTACGATAAGAGGAGAACC 1061
|||||||| ||||||||||| ||||| || || ||||||||||||||||||| |||||||
Sbjct 1222 TCAAGAATTGCCTTGTCGTCATCGTCTACAGCATTTAGTGGTTACGATAAGAAGAGAACC 1281
Query 1062 GGTTTGTTGAACTGTCACTGTGAGAAGGCGGTTATGGTTA 1101
||||||||||||||||| ||||||||||||||||||||||
Sbjct 1282 GGTTTGTTGAACTGTCATTGTGAGAAGGCGGTTATGGTTA 1321
Score = 159 bits (86), Expect = 4e-38
Identities = 92/95 (97%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1108 TTCAAAACGACTTCGCGGGAAAGGTGTTGTGCAGCAATGGCAATTCTAAACTAAGCGTGA 1167
||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1364 TTCAAAACGACGTCGCGGGAAAGGTGTTGTGCAACAATGGCAGTTCTAAACTAAGCGTGA 1423
Query 1168 CGAGTAGACCAAGGCAATGATGGATACCAAATCTT 1202
|||||||||||||||||||||||||||||||||||
Sbjct 1424 CGAGTAGACCAAGGCAATGATGGATACCAAATCTT 1458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5